test-coverage #533
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on: | |
push: | |
pull_request: | |
# for now, CRON jobs only run on the default branch of the repo (i.e. usually on master) | |
schedule: | |
# * is a special character in YAML so you have to quote this string | |
- cron: "0 4 * * *" | |
name: test-coverage | |
jobs: | |
all: | |
runs-on: ${{ matrix.config.os }} | |
name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
strategy: | |
fail-fast: false | |
matrix: | |
config: | |
# use a different tic template type if you do not want to build on all listed platforms | |
#- { os: windows-latest, r: "release", java: "true" } | |
#- { os: macOS-latest, r: "release", java: "true" } | |
- { os: ubuntu-latest, r: "release", java: "true" } | |
env: | |
# otherwise remotes::fun() errors cause the build to fail. Example: Unavailability of binaries | |
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
CRAN: ${{ matrix.config.cran }} | |
# we are not allowed to write to ~/.ccache on GH Actions | |
# setting some ccache options | |
CCACHE_BASEDIR: ${{ GITHUB.WORKSPACE }} | |
CCACHE_DIR: ${{ GITHUB.WORKSPACE }}/.ccache | |
CCACHE_NOHASHDIR: true | |
CCACHE_SLOPPINESS: include_file_ctime | |
# prevent rgl issues because no X11 display is available | |
RGL_USE_NULL: true | |
# if you use bookdown or blogdown, replace "PKGDOWN" by the respective | |
# capitalized term. This also might need to be done in tic.R | |
BUILD_PKGDOWN: ${{ matrix.config.pkgdown }} | |
# macOS >= 10.15.4 linking | |
SDKROOT: /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk | |
# use GITHUB_TOKEN from GitHub to workaround rate limits in {remotes} | |
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
steps: | |
- uses: actions/checkout@v2 | |
- uses: r-lib/actions/setup-r@v2 | |
with: | |
r-version: ${{ matrix.config.r }} | |
Ncpus: 4 | |
# LaTeX. Installation time: | |
# Linux: ~ 1 min | |
# macOS: ~ 1 min 30s | |
# Windows: never finishes | |
- uses: r-lib/actions/setup-tinytex@v2 | |
if: matrix.config.latex == 'true' | |
env: | |
# install full prebuilt version | |
TINYTEX_INSTALLER: TinyTeX | |
- uses: r-lib/actions/setup-pandoc@v2 | |
if: matrix.config.latex == 'true' | |
- uses: actions/setup-java@v1 | |
if: matrix.config.java == 'true' | |
with: | |
java-version: '8' | |
# set date/week for use in cache creation | |
# https://github.saobby.my.eu.orgmunity/t5/GitHub-Actions/How-to-set-and-access-a-Workflow-variable/m-p/42970 | |
# - cache R packages daily | |
- name: "[Cache] Prepare daily timestamp for cache" | |
if: runner.os != 'Windows' | |
id: date | |
run: echo "::set-output name=date::$(date '+%d-%m')" | |
- name: "[Cache] Cache R packages" | |
if: runner.os != 'Windows' | |
uses: pat-s/always-upload-cache@main | |
with: | |
path: ${{ env.R_LIBS_USER }} | |
key: ${{ runner.os }}-r-${{ matrix.config.r }}-${{steps.date.outputs.date}} | |
restore-keys: ${{ runner.os }}-r-${{ matrix.config.r }}-${{steps.date.outputs.date}} | |
# for some strange Windows reason this step and the next one need to be decoupled | |
- name: "[Stage] Prepare" | |
run: | | |
Rscript -e "if (!requireNamespace('remotes')) install.packages('remotes', type = 'source')" | |
Rscript -e "if (getRversion() < '3.2' && !requireNamespace('curl')) install.packages('curl', type = 'source')" | |
- name: "[Stage] [Linux] Install curl" | |
if: runner.os == 'Linux' | |
run: sudo apt install libcurl4-openssl-dev | |
- name: "[Stage] Configure R Java" | |
if: runner.os != 'Windows' && matrix.config.java == 'true' | |
run: "echo export PATH=$PATH > reconf.sh; echo export JAVA_HOME=$JAVA_HOME >> reconf.sh; echo R CMD javareconf >> reconf.sh; sudo bash reconf.sh" | |
- name: Install dependencies | |
run: | | |
install.packages(c("remotes")) | |
remotes::install_deps(dependencies = TRUE) | |
remotes::install_cran("covr") | |
shell: Rscript {0} | |
- name: Test coverage | |
run: covr::codecov() | |
shell: Rscript {0} |