fix: update to use create_pdf_report function from dqastats #536
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| on: | |
| push: | |
| pull_request: | |
| # for now, CRON jobs only run on the default branch of the repo (i.e. usually on master) | |
| schedule: | |
| # * is a special character in YAML so you have to quote this string | |
| - cron: "0 4 * * *" | |
| name: test-coverage | |
| jobs: | |
| all: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| # use a different tic template type if you do not want to build on all listed platforms | |
| #- { os: windows-latest, r: "release", java: "true" } | |
| #- { os: macOS-latest, r: "release", java: "true" } | |
| - { os: ubuntu-latest, r: "release", java: "true" } | |
| env: | |
| # otherwise remotes::fun() errors cause the build to fail. Example: Unavailability of binaries | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| CRAN: ${{ matrix.config.cran }} | |
| # we are not allowed to write to ~/.ccache on GH Actions | |
| # setting some ccache options | |
| CCACHE_BASEDIR: ${{ GITHUB.WORKSPACE }} | |
| CCACHE_DIR: ${{ GITHUB.WORKSPACE }}/.ccache | |
| CCACHE_NOHASHDIR: true | |
| CCACHE_SLOPPINESS: include_file_ctime | |
| # prevent rgl issues because no X11 display is available | |
| RGL_USE_NULL: true | |
| # if you use bookdown or blogdown, replace "PKGDOWN" by the respective | |
| # capitalized term. This also might need to be done in tic.R | |
| BUILD_PKGDOWN: ${{ matrix.config.pkgdown }} | |
| # macOS >= 10.15.4 linking | |
| SDKROOT: /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk | |
| # use GITHUB_TOKEN from GitHub to workaround rate limits in {remotes} | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| Ncpus: 4 | |
| # LaTeX. Installation time: | |
| # Linux: ~ 1 min | |
| # macOS: ~ 1 min 30s | |
| # Windows: never finishes | |
| - uses: r-lib/actions/setup-tinytex@v2 | |
| if: matrix.config.latex == 'true' | |
| env: | |
| # install full prebuilt version | |
| TINYTEX_INSTALLER: TinyTeX | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| if: matrix.config.latex == 'true' | |
| - uses: actions/setup-java@v4 | |
| if: matrix.config.java == 'true' | |
| with: | |
| distribution: 'temurin' | |
| java-version: '11' | |
| - name: Install sys deps for Ubuntu | |
| if: runner.os == 'Linux' | |
| run: sudo apt update && sudo apt install -y libgit2-dev libcurl4-openssl-dev | |
| - name: "[Cache] Prepare daily timestamp for cache" | |
| if: runner.os != 'Windows' | |
| id: date | |
| run: echo "date=$(date '+%d-%m')" >> $GITHUB_OUTPUT | |
| - name: "[Cache] Restore R package cache" | |
| if: runner.os != 'Windows' | |
| uses: actions/cache/restore@v3 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-r-${{ matrix.config.r }}-${{steps.date.outputs.date}} | |
| - name: "[Stage] Configure R Java" | |
| if: runner.os != 'Windows' && matrix.config.java == 'true' | |
| run: "echo export PATH=$PATH > reconf.sh; echo export JAVA_HOME=$JAVA_HOME >> reconf.sh; echo R CMD javareconf >> reconf.sh; sudo bash reconf.sh" | |
| - name: Install dependencies | |
| run: | | |
| install.packages(c("remotes")) | |
| remotes::install_deps(dependencies = TRUE) | |
| remotes::install_cran("covr") | |
| shell: Rscript {0} | |
| - name: Test coverage | |
| run: covr::codecov() | |
| shell: Rscript {0} |