install system dependencies

.github/workflows/ci-cd.yml

@@ -39,16 +39,16 @@ jobs:
           # Enable RStudio Package Manager to speed up package installation
           use-public-rspm: true
 
-      - name: Activate renv and restore packages with cache
-        uses: r-lib/actions/setup-renv@v2
+      - name: Install system dependencies
+        # This is not taken care of (yet) by r-lib/actions/setup-renv
+        # Package distro used to get the distro for the used ubuntu-latest
+        run: |
+          Rscript -e "install.packages(c('remotes', 'distro'))"
+          while read -r cmd
+          do
+            eval sudo $cmd
+          done < <(Rscript -e 'writeLines(with(distro::distro(), remotes::system_requirements(id, short_version)))')
 
-      # - name: Install system dependencies
-      #   env:
-      #     RHUB_PLATFORM: linux-x86_64-ubuntu-gcc
-      #   run: |
-      #     Rscript -e "renv::install('r-hub/sysreqs')"
-      #     sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))")
-      #     sudo -s eval "$sysreqs"
       - name: Activate renv and restore packages with cache
         uses: r-lib/actions/setup-renv@v2