set run-tests only if condition is true #1
Closed
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This reverts commit 83d6efe.
Run sync on self-hosted runners
don't warn about missing `meta` value in meta.yml
…refix Download: Add docker prefix for absolute container URIs as well.
mirpedrol
force-pushed
the
pytest-version-matrix
branch
from
4be108a
to
4aceb99
Compare
mirpedrol
added a commit
that referenced
this pull request
Jan 18, 2024
* Parallelize pytest (#1) * use PR to test aws runners * fix coverage step * try self-hosted again * smaller naming changes * try to use github runner when available * Revert "try to use github runner when available" This reverts commit 3b69094. * run all tests even if one fails * print nextflow config * use full path for nextflow.config * fix workflow * use different logic * revert * try more self-hosted * remove config options * switch to new profile * print config files, try fix for coverage creation * print configs with profiles * fix config command * simply list_tests * print more configs * don't print configs in this step * exclude some template settings to be able to use nf-core configs * try to fix coverage upload * debugging coverage step * ignore coverage errors for now * seems to work now? * add codecov token * try to fix name collisions * add github token to editorconfig step * debug changed directory * don't change path * more codecov debuggin * specify codecov file * test on github runners, to see speed differences * run also list_test in github * don't reverse for now * more reversion * remove debugging * cleanup work directory * switch to self-hosted again * don't need to install everything for coverage * always cleanup work directory * debug coverage * cleanup everything * debugging coverage * fail gracefully during cleanup * debug no cleaned up paths * install tools also in coverage job * add coverage report back in * coverage debugging... * change nextflow working dir * kick off tests * add debugger ssh * more debugging * try non-cached python * figure out differences in paths * trying to set the python directory manually * hopefully harmonizing python paths * fix coverage step * trying to fix the source error * specify full path for coverage * copy more settings from pytest-split * handle exit code better * didn't work * switch to new gitlab branch * remove coverage output specification * omit all template files in coverage * try different coverage_config path * fix coverage artifact upload * upgrade artifact download * run coverage step explicetly * change location of coverage config * add ssh debugger * use old version of artifact upload * debug artifact upload * use files codecov-action argument * debug coverage * update action versions * fix cleanup step * run small jobs still on github * switch to pre-commit for code linting * don't run pyupgrade for now * fix job name * debugging * keep coverage files * test better cleanup * fix parameter position * add cleanup step to nextflow steps * use nextflow clean * remove ssh step * test cirun.io * don't set AGENT_TOOLSDIRECTORY * add java setup step * use general gitlab branch * change image id back * debug cleanup step * use sudo rm * run everything on our own runners again * use correct gitlab branch * use java from runners * test coverage for one file * run individual test also parallel * add github token to setup-python * use same directory structure for coverage * don't ran everything parallel * move coveragerc * remove debugging code * run some template variations on github * remove more left over code * set correct runner * set profile depending on runner * set profile docker for github runners * use pre-commit for all linting jobs * fix editorconfig * fix .editorconfig and makefile * update changelog --------- Co-authored-by: Júlia Mir Pedrol <mirp.julia@gmail.com>
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
testing