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Update dependencies to latest versions and add some new tensor methods #313

Merged
merged 38 commits into from
Sep 25, 2024
Merged

Update dependencies to latest versions and add some new tensor methods #313

merged 38 commits into from
Sep 25, 2024

Commits on Jul 24, 2024

  1. dependencies: udpate dependency versions 

     - updated R to 4.4.1
 - updated renv version
 - updated all dependencies in renv.lock to latest versions and updated
   renv.lock
 - commit updated configuration files in renv/ folder
    @brendanlu
    brendanlu committed Jul 24, 2024
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  2. dependencies: update renv

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    brendanlu committed Jul 24, 2024
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  3. dependencies: explicitly add devtools to renv.lock

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    brendanlu committed Jul 24, 2024
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Commits on Jul 25, 2024

  1. update: add dctii transforms consistent with Scipy

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    brendanlu committed Jul 25, 2024
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  2. documentation: add roxygen2 comments

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    brendanlu committed Jul 25, 2024
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  3. documentation: investigate problem

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    brendanlu committed Jul 25, 2024
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  4. documentation: remove non ascii character

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    brendanlu committed Jul 25, 2024
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  5. documentation: remove deprecated @doctype

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    brendanlu committed Jul 25, 2024
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  6. tests: inverse tests passing for dctii

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    brendanlu committed Jul 25, 2024
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  7. testing: ensure fft dct algorithm is sensible

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    brendanlu committed Jul 25, 2024
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  8. testing: fix - pass in ortho into dctii/idctii

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    brendanlu committed Jul 25, 2024
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Commits on Jul 29, 2024

  1. update: add new mtransform utils 

     - added Saritha's algorithm alongside a BiocParallel implementation
   which shows reasonable use-cases for certain input sizes
 - delete old dtt based implementation
 - updat dep's with gsignal and remove dtt
 - move old validated function to testing module for later comparison
 - TODO: write some sensible tests in the testing file....
    @brendanlu
    brendanlu committed Jul 29, 2024
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  2. minor: progress save off of laptop devel

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    brendanlu committed Jul 29, 2024
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  3. update: finish m-product utils (+TESTING)

    @brendanlu
    brendanlu committed Jul 29, 2024
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  4. update: add UNTESTED m_product function

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  5. update: m-product passing error message tests

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    brendanlu committed Jul 29, 2024
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  6. minor: mprod testing and param validation

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  7. bedtime: save untested tsvdm

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    brendanlu committed Jul 29, 2024
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Commits on Jul 31, 2024

  1. testing: validate tsvdm tests

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    brendanlu committed Jul 31, 2024
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Commits on Aug 7, 2024

  1. update: add untested tpca 

    LABWORK - 7/08/2024
    @brendanlu
    brendanlu committed Aug 7, 2024
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  2. update: tpca running

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    brendanlu committed Aug 7, 2024
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  3. update: change unravel_index not working

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    brendanlu committed Aug 7, 2024
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Commits on Aug 28, 2024

  1. fix: tsvdm filling dimensions + update lock

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    brendanlu committed Aug 28, 2024
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  2. update: tpca matrix compression working

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    brendanlu committed Aug 28, 2024
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  3. update: return loadings in tpca

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    brendanlu committed Aug 28, 2024
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  4. minor: minor changes

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    brendanlu committed Aug 28, 2024
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Commits on Aug 30, 2024

  1. minor: docstrings in tens.tpca.R

    @brendanlu
    brendanlu authored Aug 30, 2024
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  2. minor: (untested) progress save

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  3. Merge branch 'master' of https://github.com/brendanlu/mixOmics

    @brendanlu
    brendanlu committed Aug 30, 2024
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Commits on Sep 1, 2024

  1. update: tpls 1 test failing

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    brendanlu committed Sep 1, 2024
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  2. update: PASSES TESTS tpls basic sensible algorithm

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    brendanlu committed Sep 1, 2024
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Commits on Sep 11, 2024

  1. update: UNTESTED tpls canonical & regression

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    brendanlu committed Sep 11, 2024
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  2. minor: (UNTESTED) fix tpls errors

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    brendanlu committed Sep 11, 2024
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Commits on Sep 24, 2024

  1. update: tpls fix, basic tests pass 

    R is a headache.
    @brendanlu
    brendanlu committed Sep 24, 2024
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  2. minor: fix stupid linter error

    @brendanlu
    brendanlu committed Sep 24, 2024
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  3. minor: suppress annoying warnings in tests

    @brendanlu
    brendanlu committed Sep 24, 2024
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  4. testing: only errors are existing parallel tests 

    (when run on local Windows machine)
    @brendanlu
    brendanlu committed Sep 24, 2024
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  5. minor: update renv.lock test results unchanged

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    brendanlu committed Sep 24, 2024
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