Fix doctests in matrix_cmr_sparse.pyx and Refactor child parent indices #2202
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| name: Build & Test | |
| on: | |
| pull_request: | |
| merge_group: | |
| push: | |
| branches: | |
| - master | |
| - develop | |
| # Ignore pushes on tags to prevent two uploads of codecov reports | |
| tags-ignore: ['**'] | |
| workflow_dispatch: | |
| # Allow to run manually | |
| inputs: | |
| platform: | |
| description: 'Platform' | |
| required: true | |
| default: 'ubuntu-focal-standard' | |
| docker_tag: | |
| description: 'Docker tag' | |
| required: true | |
| default: 'dev' | |
| concurrency: | |
| # Cancel previous runs of this workflow for the same branch | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| get_ci_fixes: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| id: checkout | |
| uses: actions/checkout@v4 | |
| - name: Merge CI fixes from sagemath/sage | |
| run: | | |
| .ci/merge-fixes.sh | |
| env: | |
| GH_TOKEN: ${{ github.token }} | |
| SAGE_CI_FIXES_FROM_REPOSITORIES: ${{ vars.SAGE_CI_FIXES_FROM_REPOSITORIES }} | |
| - name: Store CI fixes in upstream artifact | |
| run: | | |
| mkdir -p upstream | |
| if git format-patch --stdout test_base > ci_fixes.patch; then | |
| cp ci_fixes.patch upstream/ | |
| fi | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| path: upstream | |
| name: upstream | |
| build: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/sagemath/sage/sage-${{ github.event.inputs.platform || 'ubuntu-focal-standard' }}-with-targets:${{ github.event.inputs.docker_tag || 'dev'}} | |
| needs: [get_ci_fixes] | |
| steps: | |
| - name: Checkout | |
| id: checkout | |
| uses: actions/checkout@v4 | |
| - name: Update system packages | |
| id: prepare | |
| run: | | |
| export PATH="build/bin:$PATH" | |
| eval $(sage-print-system-package-command auto update) | |
| eval $(sage-print-system-package-command auto --spkg --yes --no-install-recommends install git) | |
| - name: Add prebuilt tree as a worktree | |
| id: worktree | |
| run: | | |
| set -ex | |
| git config --global --add safe.directory $(pwd) | |
| .ci/retrofit-worktree.sh worktree-image /sage | |
| - name: Download upstream artifact | |
| uses: actions/download-artifact@v3 | |
| with: | |
| path: upstream | |
| name: upstream | |
| - name: Apply CI fixes from sagemath/sage | |
| # After applying the fixes, make sure all changes are marked as uncommitted changes. | |
| run: | | |
| if [ -r upstream/ci_fixes.patch ]; then | |
| (cd worktree-image && git commit -q -m "current changes" --allow-empty -a && git am; git reset --quiet old; git add -N .) < upstream/ci_fixes.patch | |
| fi | |
| - name: Incremental build | |
| id: incremental | |
| run: | | |
| # Now re-bootstrap and build. The build is incremental because we were careful with the timestamps. | |
| ./bootstrap && make build | |
| working-directory: ./worktree-image | |
| env: | |
| MAKE: make -j2 --output-sync=recurse | |
| SAGE_NUM_THREADS: 2 | |
| - name: Build modularized distributions | |
| if: (success() || failure()) && steps.worktree.outcome == 'success' | |
| run: make V=0 tox && make SAGE_CHECK=no pypi-wheels | |
| working-directory: ./worktree-image | |
| env: | |
| MAKE: make -j2 --output-sync=recurse | |
| SAGE_NUM_THREADS: 2 | |
| - name: Static code check with pyright | |
| if: (success() || failure()) && steps.worktree.outcome == 'success' | |
| uses: jakebailey/pyright-action@v1 | |
| with: | |
| version: 1.1.332 | |
| # Many warnings issued by pyright are not yet helpful because there is not yet enough type information. | |
| no-comments: true | |
| working-directory: ./worktree-image | |
| env: | |
| # To avoid out of memory errors | |
| NODE_OPTIONS: --max-old-space-size=8192 | |
| - name: Static code check with pyright (annotated) | |
| if: (success() || failure()) && steps.worktree.outcome == 'success' | |
| uses: jakebailey/pyright-action@v1 | |
| with: | |
| version: 1.1.332 | |
| # Issue errors | |
| no-comments: false | |
| level: error | |
| working-directory: ./worktree-image | |
| env: | |
| # To avoid out of memory errors | |
| NODE_OPTIONS: --max-old-space-size=8192 | |
| - name: Clean (fallback to non-incremental) | |
| id: clean | |
| if: (success() || failure()) && steps.worktree.outcome == 'success' && steps.incremental.outcome != 'success' | |
| run: | | |
| set -ex | |
| ./bootstrap && make doc-clean doc-uninstall sagelib-clean && git clean -fx src/sage && ./config.status | |
| working-directory: ./worktree-image | |
| env: | |
| MAKE: make -j2 | |
| SAGE_NUM_THREADS: 2 | |
| - name: Build | |
| # This step is needed because building the modularized distributions installs some optional packages, | |
| # so the editable install of sagelib needs to build the corresponding optional extension modules. | |
| id: build | |
| if: (success() || failure()) && (steps.incremental.outcome == 'success' || steps.clean.outcome == 'success') | |
| run: | | |
| make build | |
| working-directory: ./worktree-image | |
| env: | |
| MAKE: make -j2 --output-sync=recurse | |
| SAGE_NUM_THREADS: 2 | |
| # Testing | |
| - name: Test changed files (sage -t --new) | |
| if: (success() || failure()) && steps.build.outcome == 'success' | |
| run: | | |
| # We run tests with "sage -t --new"; this only tests the uncommitted changes. | |
| ./sage -t --new -p2 | |
| working-directory: ./worktree-image | |
| env: | |
| MAKE: make -j2 --output-sync=recurse | |
| SAGE_NUM_THREADS: 2 | |
| - name: Test modularized distributions | |
| if: (success() || failure()) && steps.build.outcome == 'success' | |
| run: make V=0 tox && make pypi-wheels-check | |
| working-directory: ./worktree-image | |
| env: | |
| MAKE: make -j2 --output-sync=recurse | |
| SAGE_NUM_THREADS: 2 | |
| - name: Check that all modules can be imported | |
| run: | | |
| # The following command checks that all modules can be imported. | |
| # The output also includes a long list of modules together with the number of tests in each module. | |
| # This can be ignored. | |
| ../sage -python -m pip install pytest-xdist | |
| ../sage -python -m pytest -c tox.ini -qq --doctest --collect-only || true | |
| working-directory: ./worktree-image/src | |
| env: | |
| # Increase the length of the lines in the "short summary" | |
| COLUMNS: 120 | |
| - name: Pytest | |
| if: contains(github.ref, 'pytest') | |
| run: | | |
| ../sage -python -m pip install coverage pytest-xdist | |
| ../sage -python -m coverage run -m pytest -c tox.ini --doctest || true | |
| working-directory: ./worktree-image/src | |
| env: | |
| # Increase the length of the lines in the "short summary" | |
| COLUMNS: 120 | |
| - name: Test all files (sage -t --all --long) | |
| if: (success() || failure()) && steps.build.outcome == 'success' | |
| run: | | |
| ./sage -python -m pip install coverage | |
| ./sage -python -m coverage run --rcfile=src/tox.ini src/bin/sage-runtests --all --long -p2 --format github --random-seed=286735480429121101562228604801325644303 | |
| working-directory: ./worktree-image | |
| - name: Prepare coverage results | |
| if: (success() || failure()) && steps.build.outcome == 'success' | |
| run: | | |
| ./sage -python -m coverage combine --rcfile=src/tox.ini | |
| ./sage -python -m coverage xml --rcfile=src/tox.ini | |
| mkdir -p coverage-report | |
| mv coverage.xml coverage-report/ | |
| working-directory: ./worktree-image | |
| - name: Upload coverage to codecov | |
| if: (success() || failure()) && steps.build.outcome == 'success' | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| directory: ./worktree-image/coverage-report |