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Annotates variants in MAF with OncoKB annotation.

AGPL-3.0 license

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Name		Name	Last commit message	Last commit date
Latest commit History 47 Commits
data		data
.gitignore		.gitignore
AnnotatorCore.py		AnnotatorCore.py
ClinicalDataAnnotator.py		ClinicalDataAnnotator.py
CnaAnnotator.py		CnaAnnotator.py
FusionAnnotator.py		FusionAnnotator.py
LICENSE		LICENSE
MafAnnotator.py		MafAnnotator.py
OncoKBPlots.py		OncoKBPlots.py
README.md		README.md
example.sh		example.sh

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oncokb-annotator

Annotates variants in MAF with OncoKB annotation.

Please try

python MafAnnotator.py -h
python FusionAnnotator.py -h
python CnaAnnotator.py -h
python ClinicalDataAnnotator.py -h
python OncoKBPlots.py -h

Example input files are under data. An example script is here: example.sh

We recommend processing MAF files by vcf2maf with MSK override isoforms before using the MafAnnotator here.

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Annotates variants in MAF with OncoKB annotation.

AGPL-3.0 license

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