Conda test #28
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| name: Conda test | |
| on: | |
| pull_request: | |
| branches: | |
| - master | |
| workflow_dispatch: | |
| schedule: | |
| - cron: '0 0 1 * *' | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest] | |
| max-parallel: 5 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: setup miniconda | |
| uses: conda-incubator/setup-miniconda@v2.2.0 | |
| with: | |
| environment-file: environment.yml | |
| activate-environment: plannotate | |
| - name: get conda info | |
| shell: bash -l {0} | |
| run: | | |
| conda info | |
| conda list | |
| - name: get plannotate dbs | |
| shell: bash -l {0} | |
| run: | | |
| python -c "from plannotate.resources import download_databases; download_databases()" | |
| - name: pytest | |
| shell: bash -l {0} | |
| run: | | |
| pip install pytest | |
| pytest --version | |
| pytest |