Report section on original raw data doesn't contain bads

[hoechenberger]

In my BIDS data, 3 channels are marked as bad. These show up correctly in the HTML repr for the filtered and cleaned raw, but not for the original raw. The content of the generated *_bads.tsv file is:

name	reason
P8	pre-existing (before MNE-BIDS-pipeline was run)
T7	pre-existing (before MNE-BIDS-pipeline was run)
TP10	pre-existing (before MNE-BIDS-pipeline was run)

I tried to understand what was going on but so far I don't really have a clue.

[hoechenberger]

I also just realized that experimenter and participant are also not correctly represented in the "original" repr.

[hoechenberger]

@SophieHerbst Do you see similar issues with your reports?

[larsoner]

Are you fully up to date with your MNE version? If you're a couple weeks behind you might be hitting a bug that was in MNE for a bit

[larsoner]

... Or if you generated those sections a couple of weeks ago could be same thing. Might be worth rerunning from scratch now to check

[larsoner]

mne-tools/mne-python#12548

[hoechenberger]

everything's up to date and i had deleted the outputs entirely...

will check again to be sure

[hoechenberger]

mne-tools/mne-python#12548

that's not the problem, it is as of part of my raw.info is simply missing

[larsoner]

Sounds like the bads just aren't being loaded from the sidecar then. I bet bads aren't displayed in the info repr if the list is empty. And they probably aren't defined in the raw on disk itself but rather in the sidecar file

[hoechenberger]

Sounds like the bads just aren't being loaded from the sidecar then.

Yep that's it. Looking into this now. Thanks for your help!