Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

add spectrum class #10184

Merged
merged 116 commits into from
Aug 27, 2022
Merged

add spectrum class #10184

merged 116 commits into from
Aug 27, 2022

Commits on Aug 23, 2022

  1. STY: alphabetize imports

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    09f5705 View commit details
    Browse the repository at this point in the history

  2. wip: first sketch of spectrum class [ci skip] 

    implement __repr__; add placeholder _repr_html_

add draft of _repr_html_

default to multitaper for Evokeds

make raw.plot_psd() use the new code path

unify viz.plot_raw_psd code path too

support unaggregated multitaper

add picks param to spectrum.plot()

fix(ish) the units() method

allow average=False as synonym for None

handle unaggregated estimates in combo with epochs

fix CI plotting

implement get_data method [ci skip]
    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    3fc05c5 View commit details
    Browse the repository at this point in the history

  3. refactor aggregation

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    781dd77 View commit details
    Browse the repository at this point in the history

  4. fix instance type checking

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    a1b7381 View commit details
    Browse the repository at this point in the history

  5. improve TODO notes

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    60b3d34 View commit details
    Browse the repository at this point in the history

  6. WIP use new class in plot_psd_topo [ci skip]

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    13af584 View commit details
    Browse the repository at this point in the history

  7. docdict additions

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    b945c6a View commit details
    Browse the repository at this point in the history

  8. implement Spectrum.to_data_frame

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    1f96f16 View commit details
    Browse the repository at this point in the history

  9. test Spectrum.to_data_frame

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    f71bd7c View commit details
    Browse the repository at this point in the history

  10. adapt to_data_frame for unaggregated spectra [ci skip]

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    dfcf5fc View commit details
    Browse the repository at this point in the history

  11. test unaggregated welch to df

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    6f75569 View commit details
    Browse the repository at this point in the history

  12. test unagg multitaper to df

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    45b819f View commit details
    Browse the repository at this point in the history

  13. make tests more similar

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    284e828 View commit details
    Browse the repository at this point in the history

  14. make DRY

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    09cbc93 View commit details
    Browse the repository at this point in the history

  15. fix epoch test

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    1156abe View commit details
    Browse the repository at this point in the history

  16. simplify test

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    46c4c6a View commit details
    Browse the repository at this point in the history

  17. fix flake

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    61885b8 View commit details
    Browse the repository at this point in the history

  18. use requires_pandas

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    d9715d3 View commit details
    Browse the repository at this point in the history

  19. fix bad rebase

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    534a951 View commit details
    Browse the repository at this point in the history

  20. fix API for epochs

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    373c314 View commit details
    Browse the repository at this point in the history

  21. use new API in example

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    c050f73 View commit details
    Browse the repository at this point in the history

  22. tiny docstring improvement

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    4a2ce7e View commit details
    Browse the repository at this point in the history

  23. fix unused import

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    a65f762 View commit details
    Browse the repository at this point in the history

  24. fix docdict key order

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    a16b6df View commit details
    Browse the repository at this point in the history

  25. do it the smarter/safer way

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    9d590be View commit details
    Browse the repository at this point in the history

  26. update tests to avoid deprecated calls

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    cf4b9f4 View commit details
    Browse the repository at this point in the history

  27. better deprectation message

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    8b58c50 View commit details
    Browse the repository at this point in the history

  28. convert more deprecated func calls to new method

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    e5e7606 View commit details
    Browse the repository at this point in the history

  29. unused imports

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    f754f27 View commit details
    Browse the repository at this point in the history

  30. fix tests

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    9714d37 View commit details
    Browse the repository at this point in the history

  31. more unused imports

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    0925a8d View commit details
    Browse the repository at this point in the history

  32. fix circular imports 

    also:
- apply isort to a couple files
- revert distracting isort on otherwise barely touched file
    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    5d27725 View commit details
    Browse the repository at this point in the history

  33. make CIs pass

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    247244b View commit details
    Browse the repository at this point in the history

  34. get I/O working

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    fe744dd View commit details
    Browse the repository at this point in the history

  35. don't store verbose attr

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    7249e2b View commit details
    Browse the repository at this point in the history

  36. test IO

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    2bbd1f6 View commit details
    Browse the repository at this point in the history

  37. fix D202

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    4d23e26 View commit details
    Browse the repository at this point in the history

  38. fix flake

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    827cc55 View commit details
    Browse the repository at this point in the history

  39. better docstring for save method and read func

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    d2dab70 View commit details
    Browse the repository at this point in the history

  40. fix compute_psd docstring

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    4465764 View commit details
    Browse the repository at this point in the history

  41. return value descr

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    baa208d View commit details
    Browse the repository at this point in the history

  42. decorate test (h5py)

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    333fdad View commit details
    Browse the repository at this point in the history

  43. fixup after rebase

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    91acc6f View commit details
    Browse the repository at this point in the history

  44. reorder methods

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    66c3bdb View commit details
    Browse the repository at this point in the history

  45. add __getitem__ functionality

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    00a56bb View commit details
    Browse the repository at this point in the history

  46. __getitem__ tests

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    18f6bb2 View commit details
    Browse the repository at this point in the history

  47. add __eq__, test for .copy(), refactor IO test

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    7193192 View commit details
    Browse the repository at this point in the history

  48. refactor to separate epochs class

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    49d1c88 View commit details
    Browse the repository at this point in the history

  49. EpochsSpectrum IO

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    bef4ca8 View commit details
    Browse the repository at this point in the history

  50. fix type checking, better variable naming

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    f1ea85f View commit details
    Browse the repository at this point in the history

  51. test evoked IO too [ci skip]

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    8f5df65 View commit details
    Browse the repository at this point in the history

  52. fix type checking some more

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    ea98ee3 View commit details
    Browse the repository at this point in the history

  53. adjust .units() for complex multitaper data

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    b6aeaf5 View commit details
    Browse the repository at this point in the history

  54. fix flake

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    3702dec View commit details
    Browse the repository at this point in the history

  55. docstring refactor

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    4325638 View commit details
    Browse the repository at this point in the history

  56. working plot_topomap implementation

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    86dd77a View commit details
    Browse the repository at this point in the history

  57. fix docstring tests

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    6f5b685 View commit details
    Browse the repository at this point in the history

  58. fix pydocstyle

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    93a122a View commit details
    Browse the repository at this point in the history

  59. add EpochsSpectrum to the public API

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    06613d5 View commit details
    Browse the repository at this point in the history

  60. make test more DRY

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    6cba353 View commit details
    Browse the repository at this point in the history

  61. tweak deprecation message

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    ed5a4b5 View commit details
    Browse the repository at this point in the history

  62. docdict/docstrings fixes

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    2999476 View commit details
    Browse the repository at this point in the history

  63. add plot_psd_topomap to mixin

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    e7ad6fd View commit details
    Browse the repository at this point in the history

  64. pytest limitation workaround

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    2e76558 View commit details
    Browse the repository at this point in the history

  65. work toward unifying plot_topomap API

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    7b5e3f7 View commit details
    Browse the repository at this point in the history

  66. don't silently overwrite units

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    7801b6a View commit details
    Browse the repository at this point in the history

  67. TODO comments [ci skip]

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    c039414 View commit details
    Browse the repository at this point in the history

  68. WIP tutorial changes

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    6002d6c View commit details
    Browse the repository at this point in the history

  69. TODO: plot_psd_topo

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    8f96d49 View commit details
    Browse the repository at this point in the history

  70. WIP plot_topo & docdict stuff

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    10dea42 View commit details
    Browse the repository at this point in the history

  71. plot_topomap docstring dedup

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    72be10b View commit details
    Browse the repository at this point in the history

  72. dedup legacy n_fft default

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    0092608 View commit details
    Browse the repository at this point in the history

  73. fix varname

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    15661ab View commit details
    Browse the repository at this point in the history

  74. more WIP plot_psd_topo

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    a738f5b View commit details
    Browse the repository at this point in the history

  75. finish migrating plot_psd_topo to mixin

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    930327e View commit details
    Browse the repository at this point in the history

  76. use new code path for plot_topomap

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    e450025 View commit details
    Browse the repository at this point in the history

  77. flake

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    130e268 View commit details
    Browse the repository at this point in the history

  78. docstring tests

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    c9a66b1 View commit details
    Browse the repository at this point in the history

  79. unused imports

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    3569820 View commit details
    Browse the repository at this point in the history

  80. whitespace

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    7b6f16e View commit details
    Browse the repository at this point in the history

  81. flake

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    a8e8da9 View commit details
    Browse the repository at this point in the history

  82. flake again

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    b2c2a43 View commit details
    Browse the repository at this point in the history

  83. add plot_topo as spectrum method

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    7a174d0 View commit details
    Browse the repository at this point in the history

  84. don't do too much

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    3702bd4 View commit details
    Browse the repository at this point in the history

  85. fix test

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    a5f2aa9 View commit details
    Browse the repository at this point in the history

  86. flake

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    f043b1c View commit details
    Browse the repository at this point in the history

  87. fix test

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    e5d5f12 View commit details
    Browse the repository at this point in the history

  88. fix tutorial

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    bce4d60 View commit details
    Browse the repository at this point in the history

  89. WIP spectrum class tutorial

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    b318852 View commit details
    Browse the repository at this point in the history

  90. codespell

    @drammock
    drammock committed Aug 23, 2022
    Configuration menu
    Copy the full SHA
    7755b95 View commit details
    Browse the repository at this point in the history

Commits on Aug 24, 2022

  1. update tutorial and repr_html template

    @drammock
    drammock committed Aug 24, 2022
    Configuration menu
    Copy the full SHA
    b2bba5a View commit details
    Browse the repository at this point in the history

  2. better repr, better shape checking

    @drammock
    drammock committed Aug 24, 2022
    Configuration menu
    Copy the full SHA
    f7be032 View commit details
    Browse the repository at this point in the history

  3. tweaks from self-review

    @drammock
    drammock committed Aug 24, 2022
    Configuration menu
    Copy the full SHA
    d7b6a8f View commit details
    Browse the repository at this point in the history

  4. update changelog

    @drammock
    drammock committed Aug 24, 2022
    Configuration menu
    Copy the full SHA
    171a217 View commit details
    Browse the repository at this point in the history

  5. flake

    @drammock
    drammock committed Aug 24, 2022
    Configuration menu
    Copy the full SHA
    ac914e8 View commit details
    Browse the repository at this point in the history

  6. fix

    @drammock
    drammock committed Aug 24, 2022
    Configuration menu
    Copy the full SHA
    cda08f7 View commit details
    Browse the repository at this point in the history

  7. undo isort / other unrelated changes

    @drammock
    drammock committed Aug 24, 2022
    Configuration menu
    Copy the full SHA
    46f27f8 View commit details
    Browse the repository at this point in the history

Commits on Aug 25, 2022

  1. use new API in tutorial

    @drammock
    drammock committed Aug 25, 2022
    Configuration menu
    Copy the full SHA
    04bb582 View commit details
    Browse the repository at this point in the history

  2. remove redundant plt_show

    @drammock
    drammock committed Aug 25, 2022
    Configuration menu
    Copy the full SHA
    02332a7 View commit details
    Browse the repository at this point in the history

  3. standardize docstring order

    @drammock
    drammock committed Aug 25, 2022
    Configuration menu
    Copy the full SHA
    da71b53 View commit details
    Browse the repository at this point in the history

  4. explain setup.cfg entry

    @drammock
    drammock committed Aug 25, 2022
    Configuration menu
    Copy the full SHA
    13bb27f View commit details
    Browse the repository at this point in the history

  5. fix html repr of units

    @drammock
    drammock committed Aug 25, 2022
    Configuration menu
    Copy the full SHA
    1d315dc View commit details
    Browse the repository at this point in the history

  6. simplify __eq__ by improving object_diff

    @drammock
    drammock committed Aug 25, 2022
    Configuration menu
    Copy the full SHA
    f3b4197 View commit details
    Browse the repository at this point in the history

  7. remove deepcopy override

    @drammock
    drammock committed Aug 25, 2022
    Configuration menu
    Copy the full SHA
    b840dc8 View commit details
    Browse the repository at this point in the history

  8. fix flake8 config

    @drammock
    drammock committed Aug 25, 2022
    Configuration menu
    Copy the full SHA
    6bbafe8 View commit details
    Browse the repository at this point in the history

  9. remove superfluous BibTeX fields [ci skip] 

    Co-authored-by: Marijn van Vliet <w.m.vanvliet@gmail.com>
    @drammock @wmvanvliet
    drammock and wmvanvliet authored Aug 25, 2022
    Configuration menu
    Copy the full SHA
    56fe694 View commit details
    Browse the repository at this point in the history

  10. misc fixes [ci skip] 

    Co-authored-by: Marijn van Vliet <w.m.vanvliet@gmail.com>
    @drammock @wmvanvliet
    drammock and wmvanvliet authored Aug 25, 2022
    Configuration menu
    Copy the full SHA
    ddf8ddf View commit details
    Browse the repository at this point in the history

  11. Update mne/viz/utils.py [ci skip] 

    Co-authored-by: Eric Larson <larson.eric.d@gmail.com>
    @drammock @larsoner
    drammock and larsoner authored Aug 25, 2022
    Configuration menu
    Copy the full SHA
    dd07b42 View commit details
    Browse the repository at this point in the history

  12. update old tutorials more thoroughly

    @drammock
    drammock committed Aug 25, 2022
    Configuration menu
    Copy the full SHA
    8c44ade View commit details
    Browse the repository at this point in the history

  13. file encoding / test comments 

    Co-authored-by: Marijn van Vliet <w.m.vanvliet@gmail.com>
    @drammock @wmvanvliet
    drammock and wmvanvliet committed Aug 25, 2022
    Configuration menu
    Copy the full SHA
    b710b10 View commit details
    Browse the repository at this point in the history

  14. use __setstate__ and __getstate__

    @drammock
    drammock committed Aug 25, 2022
    Configuration menu
    Copy the full SHA
    b97fbaa View commit details
    Browse the repository at this point in the history

  15. flake

    @drammock
    drammock committed Aug 25, 2022
    Configuration menu
    Copy the full SHA
    fcfa982 View commit details
    Browse the repository at this point in the history

Commits on Aug 26, 2022

  1. fix reject_by_annot appearing where it shouldn't

    @drammock
    drammock committed Aug 26, 2022
    Configuration menu
    Copy the full SHA
    d2829ca View commit details
    Browse the repository at this point in the history

  2. fix docstrings

    @drammock
    drammock committed Aug 26, 2022
    Configuration menu
    Copy the full SHA
    9d100a3 View commit details
    Browse the repository at this point in the history

Commits on Aug 27, 2022

  1. fix reject_by_annot handling

    @drammock
    drammock committed Aug 27, 2022
    Configuration menu
    Copy the full SHA
    943f54b View commit details
    Browse the repository at this point in the history

  2. flake

    @drammock
    drammock committed Aug 27, 2022
    Configuration menu
    Copy the full SHA
    9a98b93 View commit details
    Browse the repository at this point in the history