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MRG: Add more checks to ensure fNIRS bads are set correctly for optode pairs #9375

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merged 6 commits into from
May 11, 2021

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rob-luke
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@rob-luke rob-luke commented May 6, 2021

Reference issue

Now that users can create and modify their own fnirs data structures (#9141) this adds more checks that the data structure is correct. Follows #9184 #9185

What does this implement/fix?

fNIRS channels come in pairs (either multiple wavelengths or chromaphore). If one of the pairs is set to bad then they both should be (see similar discussion about saturation here: #9348 (comment)). An internal function already existed to check that the bids are spread correctly across pairs. Here I just add another usage of this function.

I also modify these bad checking/spreading functions to use info rather than raw. As the checking other nirs checking functions now operate on info as suggested by @HanBnrd.

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HanBnrd commented May 6, 2021

Awesome, thanks @rob-luke 🙂

@rob-luke rob-luke changed the title WIP: Add more checks to ensure fNIRS bads are set correctly for optode pairs MRG: Add more checks to ensure fNIRS bads are set correctly for optode pairs May 11, 2021
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@agramfort @larsoner could you please review

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@larsoner merge if happy

@larsoner larsoner merged commit 3149819 into mne-tools:main May 11, 2021
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Thanks @rob-luke

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4 participants