Try fixing mamba in CI, pt 3 #78
lczechAnnotations
57 errors and 31 warnings
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test (ubuntu-latest, calling-freebayes-2, mamba)
Process completed with exit code 1.
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test (ubuntu-latest, calling-haplotypecaller-2, mamba)
Process completed with exit code 1.
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test (ubuntu-latest, hafpipe-1, mamba)
Process completed with exit code 1.
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envs (ubuntu-20.04, mamba)
Process completed with exit code 1.
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test (ubuntu-latest, duplicates-dedup-1, mamba)
Process completed with exit code 1.
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envs (ubuntu-22.04, mamba)
Process completed with exit code 1.
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test (ubuntu-latest, hafpipe-2, mamba)
Process completed with exit code 1.
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test (ubuntu-latest, mapping-bwa-mem2-2, mamba)
Process completed with exit code 1.
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test (ubuntu-20.04, base)
Process completed with exit code 1.
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test (ubuntu-latest, mapping-bwaaln-3, mamba)
Process completed with exit code 1.
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example (ubuntu-20.04)
Process completed with exit code 1.
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test (ubuntu-22.04, base)
Process completed with exit code 1.
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test (ubuntu-latest, trimming-seqprep-1, mamba)
Process completed with exit code 1.
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test (ubuntu-latest, calling-bcftools-3, mamba)
Process completed with exit code 1.
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test (ubuntu-latest, mapping-bowtie2-1, mamba)
Process completed with exit code 1.
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test (ubuntu-latest, calling-haplotypecaller-3, mamba)
Process completed with exit code 1.
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test (ubuntu-latest, trimming-cutadapt-1, mamba)
Process completed with exit code 1.
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test (ubuntu-latest, mapping-bwa-mem2-1, mamba)
Process completed with exit code 1.
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test (ubuntu-latest, calling-haplotypecaller-1, mamba)
Process completed with exit code 1.
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test (ubuntu-latest, hafpipe-4, mamba)
Process completed with exit code 1.
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test (ubuntu-latest, trimming-adapterremoval-3, mamba)
Process completed with exit code 1.
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test (ubuntu-latest, pileup-1, mamba)
Process completed with exit code 1.
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test (ubuntu-latest, trimming-skewer-2, mamba)
Process completed with exit code 1.
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test (ubuntu-latest, mapping-bowtie2-2, mamba)
Process completed with exit code 1.
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test (ubuntu-latest, calling-haplotypecaller-4, mamba)
Process completed with exit code 1.
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test (ubuntu-latest, base, mamba)
Process completed with exit code 1.
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test (ubuntu-latest, trimming-adapterremoval-1, mamba)
Process completed with exit code 1.
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test (ubuntu-latest, trimming-fastp-3, mamba)
Process completed with exit code 1.
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test (ubuntu-latest, mapping-bwaaln-2, mamba)
Process completed with exit code 1.
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test (ubuntu-latest, hafpipe-3, mamba)
Process completed with exit code 1.
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test (ubuntu-latest, mapping-bwaaln-1, mamba)
Process completed with exit code 1.
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example (ubuntu-22.04)
Process completed with exit code 1.
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test (ubuntu-latest, calling-freebayes-3, mamba)
Process completed with exit code 1.
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test (ubuntu-latest, mapping-bwa-mem-1, mamba)
Process completed with exit code 1.
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test (ubuntu-latest, trimming-fastp-1, mamba)
Process completed with exit code 1.
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test (ubuntu-latest, duplicates-dedup-2, mamba)
Process completed with exit code 1.
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test (ubuntu-latest, mapping-bwaaln-4, mamba)
Process completed with exit code 1.
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test (ubuntu-latest, trimming-adapterremoval-2, mamba)
Process completed with exit code 1.
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test (ubuntu-latest, trimming-skewer-1, mamba)
Process completed with exit code 1.
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test (ubuntu-latest, calling-bcftools-4, mamba)
Process completed with exit code 1.
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test (ubuntu-latest, calling-freebayes-1, mamba)
Process completed with exit code 1.
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test (ubuntu-latest, calling-bcftools-2, mamba)
Process completed with exit code 1.
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test (ubuntu-latest, calling-bcftools-1, mamba)
Process completed with exit code 1.
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test (ubuntu-latest, trimming-cutadapt-2, mamba)
Process completed with exit code 1.
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test (ubuntu-latest, trimming-seqprep-2, mamba)
Process completed with exit code 1.
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test (ubuntu-latest, trimming-fastp-2, mamba)
Process completed with exit code 1.
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test (macos-12, base)
The run was canceled by @lczech.
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example (macos-11)
The run was canceled by @lczech.
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example (macos-11)
The operation was canceled.
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envs (macos-12, mamba)
The run was canceled by @lczech.
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envs (macos-12, mamba)
The operation was canceled.
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envs (macos-11, mamba)
The run was canceled by @lczech.
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envs (macos-11, mamba)
The operation was canceled.
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example (macos-12)
The run was canceled by @lczech.
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example (macos-12)
The operation was canceled.
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test (macos-11, base)
The run was canceled by @lczech.
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test (macos-11, base)
The operation was canceled.
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example (macos-11)
warning libmamba Could not parse mod/etag header
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example (macos-11)
warning libmamba Could not parse mod/etag header
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example (macos-11)
warning libmamba Could not parse mod/etag header
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example (macos-11)
warning libmamba Could not parse mod/etag header
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example (macos-11)
warning libmamba Could not parse mod/etag header
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example (macos-11)
warning libmamba Could not parse mod/etag header
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example (macos-11)
No files were found with the provided path: example/run.log
example/logs/
example/.snakemake/log/. No artifacts will be uploaded.
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envs (macos-12, mamba)
warning libmamba Could not parse mod/etag header
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envs (macos-12, mamba)
warning libmamba Could not parse mod/etag header
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envs (macos-12, mamba)
warning libmamba Could not parse mod/etag header
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envs (macos-12, mamba)
warning libmamba Could not parse mod/etag header
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envs (macos-12, mamba)
warning libmamba Could not parse mod/etag header
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envs (macos-12, mamba)
warning libmamba Could not parse mod/etag header
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envs (macos-11, mamba)
warning libmamba Could not parse mod/etag header
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envs (macos-11, mamba)
warning libmamba Could not parse mod/etag header
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envs (macos-11, mamba)
warning libmamba Could not parse mod/etag header
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envs (macos-11, mamba)
warning libmamba Could not parse mod/etag header
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envs (macos-11, mamba)
warning libmamba Could not parse mod/etag header
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envs (macos-11, mamba)
warning libmamba Could not parse mod/etag header
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example (macos-12)
warning libmamba Could not parse mod/etag header
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example (macos-12)
warning libmamba Could not parse mod/etag header
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example (macos-12)
warning libmamba Could not parse mod/etag header
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example (macos-12)
warning libmamba Could not parse mod/etag header
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example (macos-12)
warning libmamba Could not parse mod/etag header
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example (macos-12)
warning libmamba Could not parse mod/etag header
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test (macos-11, base)
warning libmamba Could not parse mod/etag header
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test (macos-11, base)
warning libmamba Could not parse mod/etag header
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test (macos-11, base)
warning libmamba Could not parse mod/etag header
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test (macos-11, base)
warning libmamba Could not parse mod/etag header
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test (macos-11, base)
warning libmamba Could not parse mod/etag header
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test (macos-11, base)
warning libmamba Could not parse mod/etag header
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Artifacts
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logs-example-macos-12
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logs-example-ubuntu-20.04
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logs-example-ubuntu-22.04
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logs-test-macos-11-base
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logs-test-ubuntu-20.04-base
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logs-test-ubuntu-22.04-base
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logs-test-ubuntu-latest-base
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logs-test-ubuntu-latest-calling-bcftools-1
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logs-test-ubuntu-latest-calling-bcftools-2
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logs-test-ubuntu-latest-calling-freebayes-1
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logs-test-ubuntu-latest-calling-haplotypecaller-1
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logs-test-ubuntu-latest-duplicates-dedup-1
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logs-test-ubuntu-latest-hafpipe-1
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logs-test-ubuntu-latest-hafpipe-2
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logs-test-ubuntu-latest-mapping-bowtie2-1
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logs-test-ubuntu-latest-mapping-bowtie2-2
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logs-test-ubuntu-latest-mapping-bwa-mem-1
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logs-test-ubuntu-latest-mapping-bwa-mem2-1
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logs-test-ubuntu-latest-mapping-bwa-mem2-2
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logs-test-ubuntu-latest-mapping-bwaaln-1
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logs-test-ubuntu-latest-mapping-bwaaln-4
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logs-test-ubuntu-latest-pileup-1
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logs-test-ubuntu-latest-trimming-cutadapt-1
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logs-test-ubuntu-latest-trimming-fastp-1
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logs-test-ubuntu-latest-trimming-seqprep-1
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logs-test-ubuntu-latest-trimming-seqprep-2
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logs-test-ubuntu-latest-trimming-skewer-1
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logs-test-ubuntu-latest-trimming-skewer-2
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