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NGS DNA best practice pipeline for Illumina sequencing - alignment, variant calling, annotation and QC
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molgenis/NGS_DNA
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2. Li H, Durbin R (2009). Fast and accurate short read alignment with Burrows-Wheeler transform.
3. Tarasov A et al. (2015). Sambamba: Fast processing of NGS alignment formats.
4. McKenna A et al. (2010). The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.
5. Van der Auwera GA et al. (2013). From FastQ data to high confidence variant calls: the Genome Analysis Toolkit best practices pipeline.
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NGS DNA best practice pipeline for Illumina sequencing - alignment, variant calling, annotation and QC
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