update default process values for deepvariant_call_duo/trio and cover…

…age (#617)
molgenis · Jun 13, 2024 · 294b2a3 · 294b2a3
1 parent f4564d5
commit 294b2a3
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Showing 2 changed files with 8 additions and 1 deletion.
diff --git a/config/nxf_call_snv.config b/config/nxf_call_snv.config
@@ -55,7 +55,7 @@ process {
     time = '5h'
   }
   withLabel: 'deepvariant_call_duo|deepvariant_call_trio' {
-    time = '5h'
+    time = '23h'
   }
   withLabel: 'deepvariant_concat_gvcf|deepvariant_concat_vcf' {
     memory = '2GB'

diff --git a/config/nxf_cram.config b/config/nxf_cram.config
@@ -9,4 +9,11 @@ params {
     call_str = true
     call_sv = true
   }
+}
+
+process {
+  withLabel: 'coverage' {
+		cpus = 1
+    memory = '8GB'
+  }
 }