Add Spectre CNV calling #625
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dennishendriksen
requested changes
Jul 17, 2024
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Spectre doesn't seem to work properly with adaptive sampling: fritzsedlazeck/Spectre#23. Should we do anything with this info?
bartcharbon
commented
Jul 17, 2024
Co-authored-by: Dennis Hendriksen <d.hendriksen@umcg.nl>
Co-authored-by: Dennis Hendriksen <d.hendriksen@umcg.nl>
Based on the anwser on this issue I am not sure that it cannot work, the cause of the missed call in the issue is the size of the DUP itself, not teh adaptive sampling. |
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dennishendriksen
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Jul 18, 2024
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cram/complex | PASSED | 251060=completed output/cram/complex/.nxf.log
cram/multiproject | PASSED | 251061=completed output/cram/multiproject/.nxf.log
cram/nanopore_duo | PASSED | 251062=completed output/cram/nanopore_duo/.nxf.log
cram/nanopore | PASSED | 251063=completed output/cram/nanopore/.nxf.log
cram/single | PASSED | 251064=completed output/cram/single/.nxf.log
cram/trio | PASSED | 251065=completed output/cram/trio/.nxf.log
End-to-end tests are not executed by Travis CI, please execute manually:
APPTAINER_BIND=$PWD bash test/test.shpasses