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Fix #632 .cram not published in fastq workflow #633

Merged

bartcharbon merged 2 commits into main from fix/cram_publish

Aug 22, 2024

Contributor

dennishendriksen commented Aug 21, 2024 •

edited

Loading

running tests ...
fastq/nanopore_adaptive_sampling         | PASSED | 260926=completed test/output/fastq/nanopore_adaptive_sampling/.nxf.log
done

[umcg-dhendriksen@betabarrel cram_publish]$ ll test/output/fastq/nanopore_adaptive_sampling/intermediates/
...
-rw-rw-r--. 2 umcg-dhendriksen umcg-vipt  28839397 Aug 21 07:44 vip_fam0_HG002.cram
-rw-rw-r--. 2 umcg-dhendriksen umcg-vipt      1025 Aug 21 07:44 vip_fam0_HG002.cram.crai
-rw-rw-r--. 2 umcg-dhendriksen umcg-vipt      5346 Aug 21 07:44 vip_fam0_HG002.cram.stats
...

dennishendriksen added 2 commits

August 21, 2024 09:31


          Fix #632 .cram not published in fastq workflow

d44310d


          update test to check if published cram exists

0c90f0c

bartcharbon approved these changes

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bartcharbon merged commit 6855e31 into main

1 check passed

bartcharbon deleted the fix/cram_publish branch

August 22, 2024 05:46

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