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Use <CNV:TR> instead of <STR[num]> to enable VEP annotations & fix unknown sample sex Straglr error #636

Merged
merged 4 commits into from
Sep 4, 2024
Merged

Use <CNV:TR> instead of <STR[num]> to enable VEP annotations & fix unknown sample sex Straglr error #636

merged 4 commits into from
Sep 4, 2024

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dennishendriksen
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@dennishendriksen dennishendriksen commented Sep 2, 2024 •
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running tests ...
cram/single                              | PASSED | 263417=completed test/output/cram/single/.nxf.log
vcf/aip                                  | PASSED | 263418=completed test/output/vcf/aip/.nxf.log
vcf/chd7                                 | PASSED | 263419=completed test/output/vcf/chd7/.nxf.log
vcf/corner_cases                         | PASSED | 263420=completed test/output/vcf/corner_cases/.nxf.log
vcf/deb_register                         | PASSED | 263421=completed test/output/vcf/deb_register/.nxf.log
vcf/empty_input                          | PASSED | 263422=completed test/output/vcf/empty_input/.nxf.log
vcf/empty_output_filter_samples          | PASSED | 263423=completed test/output/vcf/empty_output_filter_samples/.nxf.log
vcf/empty_output_filter                  | PASSED | 263424=completed test/output/vcf/empty_output_filter/.nxf.log
vcf/filter_samples                       | PASSED | 263425=completed test/output/vcf/filter_samples/.nxf.log
vcf/liftover                             | PASSED | 263426=completed test/output/vcf/liftover/.nxf.log
vcf/multiproject_classify                | PASSED | 263427=completed test/output/vcf/multiproject_classify/.nxf.log
vcf/mvid                                 | PASSED | 263428=completed test/output/vcf/mvid/.nxf.log
vcf/str                                  | PASSED | 263429=completed test/output/vcf/str/.nxf.log
vcf/trio                                 | PASSED | 263430=completed test/output/vcf/trio/.nxf.log
vcf/vkgl_lb                              | PASSED | 263431=completed test/output/vcf/vkgl_lb/.nxf.log
vcf/vkgl_lp                              | PASSED | 263432=completed test/output/vcf/vkgl_lp/.nxf.log
vcf/vkgl_vus                             | PASSED | 263433=completed test/output/vcf/vkgl_vus/.nxf.log
done

@dennishendriksen dennishendriksen changed the title Fix Straglr error in case of unknown sample sex @dennishendriksen Use <CNV:TR> instead of <STR[num]> to enable VEP annotations & fix Straglr error in case of unknown sample sex Sep 2, 2024
@dennishendriksen dennishendriksen changed the title @dennishendriksen Use <CNV:TR> instead of <STR[num]> to enable VEP annotations & fix Straglr error in case of unknown sample sex Use <CNV:TR> instead of <STR[num]> to enable VEP annotations & fix unknown sample sex Straglr error Sep 2, 2024
@dennishendriksen dennishendriksen marked this pull request as ready for review September 2, 2024 11:07
@bartcharbon bartcharbon merged commit fbe7e60 into main Sep 4, 2024
1 check passed
@bartcharbon bartcharbon deleted the feat/str_annotate branch September 4, 2024 07:38
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@bartcharbon bartcharbon bartcharbon approved these changes

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@dennishendriksen @bartcharbon