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NCAR to main (2025-02-10)#1653

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alperaltuntas wants to merge 79 commits intomom-ocean:mainmom-ocean/MOM6:mainfrom NCAR:dev/ncar_main_candidate_25FebNCAR/MOM6:dev/ncar_main_candidate_25FebCopy head branch name to clipboard

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Commits on Apr 4, 2024

• Enable relative path specification for IC files

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  alperaltuntas

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Commits on Apr 30, 2024

• Write unmasked ocean geometry files

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  alperaltuntas

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• Disable codecov upload requirement

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  marshallward

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Commits on May 10, 2024

• Introduce GEOM_FILE runtime parameter to set ocean_geometry file name.

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  alperaltuntas

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• Add option to avoid negative MEKE

  

  gustavo-marques

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  alperaltuntas

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• Improve description

  

  gustavo-marques

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  alperaltuntas

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• Add MEKE_positive to the control structure

  

  gustavo-marques

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• Revert a comment that was changed unintentionally.

  

  gustavo-marques

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Commits on May 24, 2024

• KE-conserving correction to velocity remap (#277)

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  iangrooms

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Commits on Jul 2, 2024

• Stochastic GM+E (#280)

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  iangrooms

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Commits on Jul 13, 2024

• +Reproducing KPP_smooth_BLD when KPP%N_SMOOTH > 1

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  Hallberg-NOAA

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  alperaltuntas

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Commits on Jul 15, 2024

• append ensemble num to geom filename in ensemble runs

  alperaltuntas

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Commits on Jul 16, 2024

• *+Make Leith viscosity runs layout-invariant

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  Hallberg-NOAA

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  alperaltuntas

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• Scale checksums in hor_bnd_diffusion

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  Hallberg-NOAA

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Commits on Jul 30, 2024

• Merge branch 'main' into merge_main_073024

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Commits on Jul 31, 2024

• Adding Ohlmann solar penetration scheme to MOM_opacity (#289)

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  fobryan3

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Commits on Aug 2, 2024

• Add MARBL to MOM6 (#157)

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  mnlevy1981

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Commits on Aug 5, 2024

• Merge branch 'dev/ncar' into merge_main_073024

  gustavo-marques

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• Add missing missing_scale argument to read_Z_edges calls

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Commits on Aug 7, 2024

• remove incorrect comma in write statements (#293)

  jedwards4b

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Commits on Aug 9, 2024

• Merge pull request #291 from gustavo-marques/merge_main_073024

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  alperaltuntas

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• Options to enforce KHTR_MIN and KHTH_MIN in the whole water column and fix naming inconsistency (#294)

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Commits on Aug 28, 2024

• MARBL: convert salt_flux to tracer flux and add to STF

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Commits on Aug 30, 2024

• Modify NUOPC cap to accept separate glc runoff fluxes (#288)

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  alperaltuntas

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• remove doxygen formatting on local variables

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Commits on Sep 3, 2024

• Merge pull request #298 from klindsay28/marbl_stf_salt_fluxes

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  mnlevy1981

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Commits on Sep 6, 2024

• Use longString in MAX_LAYER_THICKNESS (#299)

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Commits on Sep 9, 2024

• *Updates in FPMix and Stokes Most (#283)

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  gustavo-marques

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• Check if fluxes%salt_flux is associated (#301)

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  mnlevy1981

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Commits on Sep 24, 2024

• fix memory leak in NUOPC State_getImport method (#303)

  alperaltuntas

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Commits on Sep 27, 2024

• Don't compute log10(chl) for small chl

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Commits on Sep 29, 2024

• add timestamp to rpointer files (#304)

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Commits on Oct 1, 2024

• Avoid chl=0 in lookup_ohlmann_opacity()

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Commits on Oct 3, 2024

• Merge branch 'avoid_zero_chl' into dev/ncar

  mnlevy1981

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Commits on Oct 17, 2024

• Stokes MOST modifications to unresolved shear (#306)

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  gustavo-marques

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• Update CVMix external

  mnlevy1981

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• Merge pull request #311 from mnlevy1981/update_cvmix

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  mnlevy1981

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• Use new MARBL interface to initialize Chl

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  mnlevy1981

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• Add short_name to marbl_single_output_type

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• Fix comment that exceeded line-length

  mnlevy1981

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Commits on Oct 18, 2024

• Velocity remap dimensional consistency (#308)

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  iangrooms

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Commits on Oct 22, 2024

• Clean-up following review

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  mnlevy1981

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Commits on Oct 28, 2024

• Add KPP OBLdepth to restart file

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• Two changes to fpmix indexing

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Commits on Oct 29, 2024

• Update to run with CESM gnu debug

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Commits on Oct 30, 2024

• Merge branch 'fpmix_restart' into dev/ncar

  mnlevy1981

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• Merge branch 'fpmix_debug' into dev/ncar

  mnlevy1981

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• Merge branch 'initialize_chl' into dev/ncar

  mnlevy1981

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Commits on Oct 31, 2024

• Fix incorrect limiter in FULL_DEPTH_KHTR_MIN implementation (#318)

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  gustavo-marques

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Commits on Nov 1, 2024

• Two small fixes for FPMix (#321)

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  mnlevy1981

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Commits on Nov 7, 2024

• merge latest main and resolve conflicts

  alperaltuntas

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• Merge pull request #322 from alperaltuntas/merge_main

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  alperaltuntas

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Commits on Nov 22, 2024

• Replace atan with atan2 in NUOPC cap to addresss missing nvhpc support.

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Commits on Dec 11, 2024

• merge pr1647 with dev/ncar and resolve conflicts

  alperaltuntas

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Commits on Dec 13, 2024

• turn on MEKE thickness diffusivity flags only when USE_MEKE is on

  alperaltuntas

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Commits on Jan 6, 2025

• Merge branch 'pr1647e' into merge_pr1647

  alperaltuntas

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• Use latest commit from CVMix

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  mnlevy1981

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Commits on Jan 7, 2025

• make MLD_003 computation available to mixedlayer_restrat_Bodner (#327)

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  alperaltuntas

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• Merge pull request #330 from mnlevy1981/update_cvmix

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  mnlevy1981

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• Add option to read MLE Frontal-Length Scale via file

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  gustavo-marques

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Commits on Jan 8, 2025

• Fixed typos

  gustavo-marques

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• Initialize mle_fl_2d

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  gustavo-marques

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• Avoid division by zero in I_LFront calculation

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  gustavo-marques

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• Update to latest CVMix

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  mnlevy1981

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• Merge pull request #332 from mnlevy1981/update_cvmix

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  mnlevy1981

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Commits on Jan 10, 2025

• merge latest dev/ncar and resolve new conflicts in MOM_mixed_layer_restrat

  alperaltuntas

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• Merge branch 'dev_ncar_main' into mle_lf_via_file

  gustavo-marques

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Commits on Jan 13, 2025

• Merge remote-tracking branch 'upstream/main' into merge_pr1647

  alperaltuntas

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Commits on Jan 14, 2025

• fix OMP directive bug introduced during conflict reslove

  alperaltuntas

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• Merge pull request #333 from NCAR/merge_pr1647

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  alperaltuntas

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Commits on Jan 15, 2025

• Fix dimensional scaling and use Adcroft reciprocal

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  gustavo-marques

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Commits on Jan 24, 2025

• Leith+E bugfix (#334)

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  iangrooms

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• Update CVMix to latest commit

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  mnlevy1981

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Commits on Jan 25, 2025

• Merge pull request #331 from gustavo-marques/mle_lf_via_file

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  alperaltuntas

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• Merge pull request #335 from mnlevy1981/update_cvmix

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  mnlevy1981

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Commits on Feb 6, 2025

• Merge pull request #336 from mom-ocean/main

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  alperaltuntas

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Commits on Feb 10, 2025

• OMP directive fixes for build and runtime failures in CESM C cases (#337)

  alperaltuntas

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Commits on Feb 14, 2025

• Do not nullify non-present MOM_dom_unmasked pointer

  alperaltuntas

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• Remove broken symlink to MARBL (#338)

  gustavo-marques

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