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Reactome Pathway Column Links are broken (404). conf/xrefs.json needs updating #1518

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DoctorBud opened this issue Nov 10, 2017 · 2 comments

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@DoctorBud
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I just noticed that the Pathway column links on pages like https://monarchinitiative.org/gene/NCBIGene:388552#pathways give a 404 at Reactome.

My guess is that MonarchApp is using a stale version of the Reactome API, and that is because we have a stale version of this file:
https://github.com/monarch-initiative/monarch-app/blob/master/conf/xrefs.json

@jmcmurry
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jmcmurry commented Nov 10, 2017

all xrefs and external links should be driven by curie_map.yaml
We need alignment badly

@TomConlin
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according to monarch-initiative/dipper#556
dipper is producing 1,114,687 REACT curies which are born going to
'REACT': 'http://www.reactome.org/PathwayBrowser/#/'

which by default would take you to a very fancy page:

https://reactome.org/PathwayBrowser/#/R-HSA-432722

note: we should update our curie to https:// to save them a redirect

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