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Deleted branch

caufieldjhdeleted biotic_int • 
6 days ago

Improvements for the biotic interaction extraction template (#503)

Pull request merge
caufieldjhpushed 4 commits to main • a0fb9ba…2f4afda • 
6 days ago

Add qualifier field to BioticInteraction

caufieldjhcreated biotic_int • 8782b99 • 
6 days ago

Deleted branch

caufieldjhdeleted table_schema • 
on Jan 25

draft schemas for table extraction (#501)

Pull request merge
caufieldjhpushed 8 commits to main • 3945c8d…a0fb9ba • 
on Jan 25

Update poetry lock

caufieldjhpushed 2 commits to table_schema • e7d6413…62da307 • 
on Jan 25

Add python classes

caufieldjhpushed 4 commits to table_schema • ccd0ddf…e7d6413 • 
on Jan 25

draft schemas for table extraction

realmarcincreated table_schema • ccd0ddf • 
on Jan 25

Deleted branch

caufieldjhdeleted prep_v1.0.10 • 
on Dec 20, 2024

Prep for v1.0.10 (#496)

Pull request merge
caufieldjhpushed 4 commits to main • 1284863…3945c8d • 
on Dec 20, 2024

Linting in utils

caufieldjhcreated prep_v1.0.10 • b4fd6a8 • 
on Dec 20, 2024

Build out MIC extraction template (#495)

Pull request merge
caufieldjhpushed 22 commits to main • cccfacf…1284863 • 
on Dec 20, 2024

Tuning reference extraction

Revise MIC tempalate to extract nutrient to disease rels

Move codespell into main qc workflow (#494)

Deleted branch

caufieldjhdeleted codespell-move • 
on Dec 18, 2024

Move codespell into main qc workflow (#494)

Pull request merge
caufieldjhpushed 5 commits to main • cd28a9b…cccfacf • 
on Dec 18, 2024

Add codespell to tox.ini

caufieldjhpushed 1 commit to codespell-move • 1542819…90eb86c • 
on Dec 18, 2024

Use tox to run codespell

caufieldjhpushed 1 commit to codespell-move • 1d2a1b1…1542819 • 
on Dec 18, 2024

Delete .github/workflows/codespell.yml

caufieldjhpushed 1 commit to codespell-move • 7e383f5…1d2a1b1 • 
on Dec 18, 2024

Move codespell into main qc workflow

caufieldjhcreated codespell-move • 7e383f5 • 
on Dec 18, 2024

Add codespell support (config, workflow to detect/not fix) and make i…

Pull request merge
caufieldjhpushed 8 commits to main • 7199885…cd28a9b • 
on Dec 18, 2024

Deleted branch

Add phenopacket extraction template (#484)

Pull request merge
caufieldjhpushed 68 commits to main • 51b0413…7199885 • 
on Dec 13, 2024

A fix for assigning ids to Individuals

caufieldjhpushed 3 commits to 482-add-phenopacket-extraction-template • ddc1dfa…4792b15 • 
on Dec 13, 2024

Updates for RadiationTherapy class

caufieldjhpushed 9 commits to 482-add-phenopacket-extraction-template • c39a29e…ddc1dfa • 
on Dec 13, 2024

Expand the Treatment class

caufieldjhpushed 16 commits to 482-add-phenopacket-extraction-template • 83ea889…c39a29e • 
on Dec 13, 2024

A fix for the Interpretation class diagnosis slot

caufieldjhpushed 2 commits to 482-add-phenopacket-extraction-template • f76119f…83ea889 • 
on Dec 13, 2024

Expand Interpretation class and child classes

caufieldjhpushed 13 commits to 482-add-phenopacket-extraction-template • 5add454…f76119f • 
on Dec 12, 2024