HIV Inference Group webite

To do:

• Make logo and favicon
• Get working papers to publications page
• Get some nice banner images.
• Add news / events / updates / features reel.
• Get everyone profile done
• Get a proper domain
• Add blog page
• Add project pages
• Add utterances commenting option.

Editing your profile

The following steps

• Clone the repository git clone git@github.com:mrc-ide/hiv-inference-website.git
• Create a new branch using git checkout -b <new_branch_name>.
• Make changes to file and avatar within content/authors/yourname.
• Commit changes using git commit.
• Create a pull request to branch master.

Adding contents (blog post, paper)

Assumed working directory is the cloned folder above

# Start serving a preview of the website
blogdown::serve_site()

# Create a new blog
blogdown::new_post(
  title = "A title alright", 
  kind = "post/", # keep this as is
  author = "Jeff Eaton", # or "jeffeaton"
  categories = "Statistics", 
  tags = c("HIV", "Model"))

# Create a new publication
blogdown::new_content(
  path = "publication/005-Eaton/index.md", 
  kind = "publication")

It's easier to duplicate an existing one and modify it, commit, and pull request.

Notes on content formatting

Format text in YAML field

To write content in YAML fields, such as paper's summary, abstract, there are three options:

• short text: quote the text with double quote

  summary: "text go here"

• a paragraph without structure: using > after the field allows you to break the line for easier editing without reflecting the line breaks on the actual results. For example,

  summary: >
    Text
    with arbitrarily line
    break.

  will show up as

  Text with arbitrarily line break.

• a structured page: using | instead of > allow writing normal markdown, including splitting text into paragraphs.

  summary: |
    **Text**
    with arbitrarily line
  
    break.

  will appear as

  Text with arbitrarily line

  break.

Publication fields

authors

Using full names for co-authors who does not have a profile in the team and and name tags for team members to link their profile page. Team's name tags can be found in content/authors/

summary

Text will appear on publication listing but not on the main paper article.

Type

Classify publication type using the YAML field publication_types, see Tim's or Katherine's publication for examples.

• 0: Uncategorized
• 1: Conference paper
• 2: Journal article
• 3: Preprint / Working Paper
• 4: Report
• 5: Book
• 6: Book section
• 7: Thesis (v4.2+ required)
• 8: Patent (v4.2+ required)