remove file_exists statement using 'abort' in C++ code

mritchielab · Jul 11, 2023 · 7aff9d6 · 7aff9d6
1 parent 292ca2b
commit 7aff9d6
Showing 1 changed file with 6 additions and 5 deletions.
diff --git a/src/main-functions/group_bam2isoform.cpp b/src/main-functions/group_bam2isoform.cpp
@@ -141,11 +141,12 @@ void group_bam2isoform(
  const std::string &raw_gff3)
 {
  // random seed stuff here
- // if (!file_exists(bam_in + ".bai")) {
- // // Rcpp::stop("Can not find corresponding .bai file %s. Cancelling group_bam2isoform.\n", bam_in);
- // Rcpp::Rcout << "Can not find corresponding .bai file " << bam_in << ". Cancelling group_bam2isoform.\n";
- // return;
- // }
+ if (false) {
+ // if (!file_exists(bam_in + ".bai")) { // WE CAN'T CHECK THIS AS THIS IS AN ABORT STATEMENT APPARENTLY
+ Rcpp::stop("Can not find corresponding .bai file %s. Cancelling group_bam2isoform.\n", bam_in);
+ // Rcpp::Rcout << "Can not find corresponding .bai file " << bam_in << ". Cancelling group_bam2isoform.\n";
+ return;
+ }
 
  // import all the values of fa_f
  const std::unordered_map<std::string, std::string> fa_dict = get_fa_dict(fa_file);