remove bam_auxgeti from bam.h

mritchielab · Jul 31, 2023 · d094dae · d094dae
1 parent 0794ce9
commit d094dae
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diff --git a/R/find_isoform.R b/R/find_isoform.R
@@ -95,6 +95,7 @@ find_isoform_flames <- function(annotation, genome_fa, genome_bam, outdir, confi
 
  if (length(genome_bam) == 1) {
  if (config$pipeline_parameters$multithread_isoform_identification) {
+ # C++ Multithreaded implementation of python find_isoform
  find_isoform_multithread(
  gff3, genome_bam, isoform_annotation, tss_stat, genome_fa, transcript_assembly, config$isoform_parameters, ifelse(config$isoform_parameters$generate_raw_isoform, raw_splice, "")
  )

diff --git a/src/utility/bam.h b/src/utility/bam.h
@@ -573,7 +573,6 @@ extern "C" {
  // uint8_t *bam_aux_get(const bam1_t *b, const char tag[2]);
 
  // int32_t bam_aux2i(const uint8_t *s);
-// #define bam_auxasi(s) (bam_aux2i((s)))
  // float bam_aux2f(const uint8_t *s);
 #define bam_aux2d(s) (bam_aux2f((s)))
  // char bam_aux2A(const uint8_t *s);