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vcf2maf v1.3

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@ckandoth ckandoth released this 17 Jul 18:43
  • Added a maf2vcf helper script
  • Support added for many new variant effects
  • Several new test VCFs in various simple/complex formats
  • Support for extracting ALT/REF depths from various simple/complex VCF formats
  • Simple cutoff-based genotype prediction based on ALT/REF depths, if GT is undefined in VCF
  • Avoid re-annotation if a .vep.vcf or .snpeff.vcf was generated in a previous run
  • Create an output MAF with only a header, when given VCFs with zero variants