vcf2maf v1.5
- New tool maf2maf that runs maf2vcf + vcf2maf, to generate a new MAF with VEP annotations
- Support for MAFs with missing data: reasonable assumptions are made and warnings are shown as necessary
- Add a field named HGVSp_Short, for 1-letter AA codes and other customization
- Minor bugs fixed, exceptions handled, and some backward compatibility added