Problem with Installation on Windows

[hraeder41]

Hello,

I am trying to install gGnome on Windows, however I am repeatedly receiving the below error:

Error: package or namespace load failed for 'gGnome' in library.dynam(lib, package, package.lib):
DLL 'gGnome' not found: maybe not installed for this architecture?

I have followed the recommended steps in the readme, and I had a colleague successfully run the installation on Mac. I copied their steps/code, including the recommendations in issue #63 , but am still seeing this error. Is gGnome incompatible with the below architecture?

sessionInfo()
R version 4.3.1 (2023-06-16 ucrt)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 19045)

Matrix products: default

locale:
[1] LC_COLLATE=English_United States.utf8 LC_CTYPE=English_United States.utf8
[3] LC_MONETARY=English_United States.utf8 LC_NUMERIC=C
[5] LC_TIME=English_United States.utf8

time zone: America/Chicago
tzcode source: internal

attached base packages:
[1] stats4 stats graphics grDevices utils datasets methods base

other attached packages:
[1] gChain_0.2.0 rtracklayer_1.62.0 Matrix_1.6-5
[4] bamUtils_0.0.0.9000 gUtils_0.2.0 GenomicAlignments_1.38.2
[7] Rsamtools_2.18.0 Biostrings_2.70.2 XVector_0.42.0
[10] SummarizedExperiment_1.32.0 Biobase_2.62.0 MatrixGenerics_1.14.0
[13] matrixStats_1.2.0 GenomicRanges_1.54.1 GenomeInfoDb_1.38.6
[16] IRanges_2.36.0 S4Vectors_0.40.2 BiocGenerics_0.48.1
[19] data.table_1.15.2 ellipsis_0.3.2 testthat_3.2.1
[22] devtools_2.4.5 usethis_2.2.3

loaded via a namespace (and not attached):
[1] bitops_1.0-7 fastmap_1.1.1 RCurl_1.98-1.14 promises_1.2.1
[5] XML_3.99-0.16.1 digest_0.6.33 mime_0.12 lifecycle_1.0.4
[9] processx_3.8.3 magrittr_2.0.3 compiler_4.3.1 rlang_1.1.1
[13] tools_4.3.1 yaml_2.3.8 knitr_1.45 gTrack_0.1.0
[17] S4Arrays_1.2.1 htmlwidgets_1.6.4 pkgbuild_1.4.3 curl_5.2.1
[21] DelayedArray_0.28.0 pkgload_1.3.4 abind_1.4-5 BiocParallel_1.36.0
[25] miniUI_0.1.1.1 purrr_1.0.2 desc_1.4.3 grid_4.3.1
[29] urlchecker_1.0.1 profvis_0.3.8 xtable_1.8-4 cli_3.6.1
[33] rmarkdown_2.26 crayon_1.5.2 remotes_2.4.2.1 rstudioapi_0.15.0
[37] rjson_0.2.21 sessioninfo_1.2.2 cachem_1.0.8 stringr_1.5.1
[41] zlibbioc_1.48.0 parallel_4.3.1 BiocManager_1.30.22 restfulr_0.0.15
[45] vctrs_0.6.5 callr_3.7.5 glue_1.7.0 codetools_0.2-19
[49] ps_1.7.6 stringi_1.8.3 later_1.3.2 BiocIO_1.12.0
[53] htmltools_0.5.7 brio_1.1.4 GenomeInfoDbData_1.2.11 R6_2.5.1
[57] evaluate_0.23 shiny_1.8.0 lattice_0.22-5 memoise_2.0.1
[61] httpuv_1.6.14 Rcpp_1.0.12 SparseArray_1.2.4 xfun_0.40
[65] fs_1.6.3

[imielinski]

Hi all – sorry, windows is unfortunately not yet supported Marcin From: Henry Raeder ***@***.***> Reply-To: mskilab-org/gGnome ***@***.***> Date: Wednesday, March 6, 2024 at 4:18 PM To: mskilab-org/gGnome ***@***.***> Cc: Subscribed ***@***.***> Subject: [mskilab-org/gGnome] Problem with Installation on Windows (Issue #131) Hello, I am trying to install gGnome on Windows, however I am repeatedly receiving the below error: Error: package or namespace load failed for 'gGnome' in library.dynam(lib, package, package.lib): DLL 'gGnome' not found: maybe not installed for this architecture? I have followed the recommended steps in the readme, and I had a colleague successfully run the installation. I copied their steps/code, including the recommendations in issue #63 , but am still seeing this error. Is gGnome incompatible with the below architecture? sessionInfo() R version 4.3.1 (2023-06-16 ucrt) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 10 x64 (build 19045) Matrix products: default locale: [1] LC_COLLATE=English_United States.utf8 LC_CTYPE=English_United States.utf8 [3] LC_MONETARY=English_United States.utf8 LC_NUMERIC=C [5] LC_TIME=English_United States.utf8 time zone: America/Chicago tzcode source: internal attached base packages: [1] stats4 stats graphics grDevices utils datasets methods base other attached packages: [1] gChain_0.2.0 rtracklayer_1.62.0 Matrix_1.6-5 [4] bamUtils_0.0.0.9000 gUtils_0.2.0 GenomicAlignments_1.38.2 [7] Rsamtools_2.18.0 Biostrings_2.70.2 XVector_0.42.0 [10] SummarizedExperiment_1.32.0 Biobase_2.62.0 MatrixGenerics_1.14.0 [13] matrixStats_1.2.0 GenomicRanges_1.54.1 GenomeInfoDb_1.38.6 [16] IRanges_2.36.0 S4Vectors_0.40.2 BiocGenerics_0.48.1 [19] data.table_1.15.2 ellipsis_0.3.2 testthat_3.2.1 [22] devtools_2.4.5 usethis_2.2.3 loaded via a namespace (and not attached): [1] bitops_1.0-7 fastmap_1.1.1 RCurl_1.98-1.14 promises_1.2.1 [5] XML_3.99-0.16.1 digest_0.6.33 mime_0.12 lifecycle_1.0.4 [9] processx_3.8.3 magrittr_2.0.3 compiler_4.3.1 rlang_1.1.1 [13] tools_4.3.1 yaml_2.3.8 knitr_1.45 gTrack_0.1.0 [17] S4Arrays_1.2.1 htmlwidgets_1.6.4 pkgbuild_1.4.3 curl_5.2.1 [21] DelayedArray_0.28.0 pkgload_1.3.4 abind_1.4-5 BiocParallel_1.36.0 [25] miniUI_0.1.1.1 purrr_1.0.2 desc_1.4.3 grid_4.3.1 [29] urlchecker_1.0.1 profvis_0.3.8 xtable_1.8-4 cli_3.6.1 [33] rmarkdown_2.26 crayon_1.5.2 remotes_2.4.2.1 rstudioapi_0.15.0 [37] rjson_0.2.21 sessioninfo_1.2.2 cachem_1.0.8 stringr_1.5.1 [41] zlibbioc_1.48.0 parallel_4.3.1 BiocManager_1.30.22 restfulr_0.0.15 [45] vctrs_0.6.5 callr_3.7.5 glue_1.7.0 codetools_0.2-19 [49] ps_1.7.6 stringi_1.8.3 later_1.3.2 BiocIO_1.12.0 [53] htmltools_0.5.7 brio_1.1.4 GenomeInfoDbData_1.2.11 R6_2.5.1 [57] evaluate_0.23 shiny_1.8.0 lattice_0.22-5 memoise_2.0.1 [61] httpuv_1.6.14 Rcpp_1.0.12 SparseArray_1.2.4 xfun_0.40 [65] fs_1.6.3 — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>

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[hraeder41]

No problem, thank you for confirming!