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  1. MTBseq-nf MTBseq-nf Public

    MTBSeq made simple and easy using Nextflow and nf-core standard.

    Nextflow 8 1

  2. MAGMA MAGMA Public

    Forked from TORCH-Consortium/MAGMA

    MAGMA pipeline (based on XBS-core and Nextflow)

    Nextflow

Repositories

Showing 9 of 9 repositories
  • MTBseq-nf Public

    MTBSeq made simple and easy using Nextflow and nf-core standard.

    mycobactopia-org/MTBseq-nf’s past year of commit activity
    Nextflow 8 MIT 1 11 (2 issues need help) 0 Updated Sep 18, 2024
  • TB-DROP Public Forked from nottwy/TB-DROP

    Deep Learning-based A Tool used to Drug Resistance Prediction of Mycobacterium tuberculosis Utilizing Whole Genome Mutations

    mycobactopia-org/TB-DROP’s past year of commit activity
    Python 0 1 0 0 Updated Nov 27, 2023
  • clockwork Public Forked from iqbal-lab-org/clockwork

    CRyPTIC data processing pipelines

    mycobactopia-org/clockwork’s past year of commit activity
    HTML 0 MIT 22 0 0 Updated Oct 16, 2023
  • MycoVarP-nf Public
    mycobactopia-org/MycoVarP-nf’s past year of commit activity
    Groovy 3 MIT 0 1 0 Updated Apr 7, 2023
  • MAGMA Public Forked from TORCH-Consortium/MAGMA

    MAGMA pipeline (based on XBS-core and Nextflow)

    mycobactopia-org/MAGMA’s past year of commit activity
    Nextflow 0 GPL-3.0 3 0 0 Updated Apr 1, 2023
  • bovisanalyzer Public Forked from avantonder/bovisanalyzer

    nextflow pipeline for analyzing Mycobacterium bovis genomes

    mycobactopia-org/bovisanalyzer’s past year of commit activity
    Nextflow 0 MIT 2 0 0 Updated Mar 16, 2023
  • ONT-TB-NF Public Forked from HKU-BAL/ONT-TB-NF

    Comprehensive pipeline for detection of TB from ONT adaptive sequencing and amplicon data.

    mycobactopia-org/ONT-TB-NF’s past year of commit activity
    Nextflow 1 BSD-3-Clause 1 0 0 Updated Nov 22, 2022
  • MTB-CNN Public Forked from aggreen/MTB-CNN

    CNN models for antibiotic resistance prediction in M. tuberculosis genomes. From Green & Yoon et al (forthcoming)

    mycobactopia-org/MTB-CNN’s past year of commit activity
    Jupyter Notebook 0 10 0 0 Updated Jun 15, 2022
  • NGS-analysis-from-TB-sputum Public Forked from kachelo/NGS-analysis-from-TB-sputum

    A pipeline to remove contaminant NGS reads from TB-sputum samples

    mycobactopia-org/NGS-analysis-from-TB-sputum’s past year of commit activity
    Makefile 0 GPL-3.0 2 0 0 Updated Oct 25, 2021

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