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result from "modkit pileup" command
question
Looking for clarification on inputs and/or outputs
#288
opened Oct 22, 2024 by
Flower9618
Modkit calling methylation on incompatible nucleotide
question
Looking for clarification on inputs and/or outputs
#286
opened Oct 20, 2024 by
Ge0rges
Indexing error in dmr multi
bug
Something isn't working
DMR
modkit dmr
troubleshooting
workflow and data preparation questions
#285
opened Oct 18, 2024 by
Ge0rges
Inferring Hypermethylated and Hypomethylated Bases from ModKit DMR Pair Results
question
Looking for clarification on inputs and/or outputs
#283
opened Oct 18, 2024 by
Bhavesh-Tiwarekar
benchmark comparison of DMR detection tool
DMR
modkit dmr
documentation
Improvements or additions to documentation
#281
opened Oct 17, 2024 by
charliechen912ilovbash
modkit dmr pair of pileup bed file subset to 4mC
troubleshooting
workflow and data preparation questions
#279
opened Oct 15, 2024 by
SimonChen1997
Validity of correlation between different RNA modification calls
enhancement
New feature or request
question
Looking for clarification on inputs and/or outputs
#278
opened Oct 14, 2024 by
mbosm
m6A methylation analysis and explanation of output files
question
Looking for clarification on inputs and/or outputs
#276
opened Oct 8, 2024 by
JhinJhinJhin
Redundant motifs from New feature or request
modkit motif search
enhancement
#272
opened Sep 30, 2024 by
galenptacek
Request: additional output columns for extract
enhancement
New feature or request
#270
opened Sep 28, 2024 by
OberonDixon
Difference in total counts of each probability per modification in different pore chemistries
question
Looking for clarification on inputs and/or outputs
#269
opened Sep 26, 2024 by
eesiribloom
adjust-mods for skipped reads
question
Looking for clarification on inputs and/or outputs
#268
opened Sep 25, 2024 by
ekushele
Strange bias between percent_modified and valid_coverage from modkit pileup
question
Looking for clarification on inputs and/or outputs
#262
opened Sep 13, 2024 by
flofloflo-cell
Normalized the DMR scores
question
Looking for clarification on inputs and/or outputs
#261
opened Sep 13, 2024 by
Congnguyenn
how to interpret 5mC and 5hmC call for same position in the genome
question
Looking for clarification on inputs and/or outputs
#258
opened Sep 9, 2024 by
dasn588
Using a negative control sample to inform thresholds?
question
Looking for clarification on inputs and/or outputs
#257
opened Sep 6, 2024 by
hackkr
modkit pileup - modified based code = 17802
question
Looking for clarification on inputs and/or outputs
#256
opened Sep 4, 2024 by
reJELIN
Setting appropriate thresholds for calling m6A and pseU using modkit pileup - What to make of high Nfail numbers?
question
Looking for clarification on inputs and/or outputs
#255
opened Sep 2, 2024 by
DepledgeLab
--call-mods not working on m6a
question
Looking for clarification on inputs and/or outputs
#252
opened Aug 28, 2024 by
faulk-lab
How does modkit extract handle indels on reads?
enhancement
New feature or request
question
Looking for clarification on inputs and/or outputs
#249
opened Aug 21, 2024 by
Fu-Yilei
modkit extract m6A tsv problems
enhancement
New feature or request
#246
opened Aug 9, 2024 by
kir1to455
thread 'main' panicked, "index out of bounds: the len is 10 but the index is 10"
build-available
custom build produced for fix.
troubleshooting
workflow and data preparation questions
#244
opened Aug 7, 2024 by
lucy924
Differential methylation scoring
DMR
modkit dmr
question
Looking for clarification on inputs and/or outputs
#243
opened Aug 5, 2024 by
setshabaTaukobong
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