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141 Open 246 Closed
141 Open 246 Closed
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Issues list

Differential Methylation Analysis Using MODKIT: CPM Normalization and Handling Missing Data
#390 opened Feb 27, 2025 by Seongmin-Jang-1165
Unclear modkit pileup --region question Looking for clarification on inputs and/or outputs
#386 opened Feb 25, 2025 by Ge0rges
2
Coverage of modekit pileup results does not match the coverage displayed on IGV question Looking for clarification on inputs and/or outputs
#385 opened Feb 25, 2025 by rania-o
2
Clarification on Interpretation of 5hmC and 5mC question Looking for clarification on inputs and/or outputs
#384 opened Feb 24, 2025 by Proy321
5
methylation_entropy test failure troubleshooting workflow and data preparation questions
#383 opened Feb 24, 2025 by verdurin
5
Clarification on haplotagging in modkit pileup output question Looking for clarification on inputs and/or outputs
#380 opened Feb 21, 2025 by K1999ban
1
Increasing Read Usage in DMR question Looking for clarification on inputs and/or outputs
#378 opened Feb 20, 2025 by maceyslota
2
m6A sites identified on transcript basis question Looking for clarification on inputs and/or outputs
#377 opened Feb 19, 2025 by baibhav-bioinfo
3
failed to read record from bam information, truncated record in SAM/BAM/CRAM file troubleshooting workflow and data preparation questions
#375 opened Feb 17, 2025 by ziphra
10
Issue in Inosine detection question Looking for clarification on inputs and/or outputs
#373 opened Feb 10, 2025 by Salvobioinfo
3
Determining Ml score threshold for quantitative comparison of methylation levels across two datasets at the same loci question Looking for clarification on inputs and/or outputs
#372 opened Feb 10, 2025 by ngamarra
2
Can modkit be run through epi2me labs? question Looking for clarification on inputs and/or outputs
#371 opened Feb 10, 2025 by irc47
1
Dmr pair segment misses clearly differentially methylated region DMR modkit dmr troubleshooting workflow and data preparation questions
#367 opened Feb 6, 2025 by Aarhus-kga
2
Effect size in documentation should report cond-ctrl documentation Improvements or additions to documentation
#366 opened Feb 5, 2025 by leetaiyi
1
Filtering bedmethyl file and DMR analysis DMR modkit dmr question Looking for clarification on inputs and/or outputs
#364 opened Feb 3, 2025 by baibhav-bioinfo
9
Combining 5mC with 5hmC question Looking for clarification on inputs and/or outputs
#363 opened Feb 2, 2025 by bopohdr
1
Do you use modkit dmr? good first issue Good for newcomers
#361 opened Jan 31, 2025 by ArtRand
3
find-motifs stuck in loop? bug Something isn't working
#360 opened Jan 31, 2025 by Ge0rges
2
Final CpG of read detection question Looking for clarification on inputs and/or outputs
#359 opened Jan 29, 2025 by benjamin-bfeng
3
threshold modification in modkit pileup question Looking for clarification on inputs and/or outputs
#357 opened Jan 29, 2025 by baibhav-bioinfo
1
Feature Request: Add --partition-tag option to "modkit extract calls" enhancement New feature or request
#356 opened Jan 28, 2025 by zaka-edd
2
Haplotagged CRAM and bedmethyl question Looking for clarification on inputs and/or outputs
#355 opened Jan 27, 2025 by umranyaman
4
Dorado for basecalling vs modification detection question Looking for clarification on inputs and/or outputs
#354 opened Jan 27, 2025 by baibhav-bioinfo
2
fetching sequence failed, FASTA read interval was out of bounds troubleshooting workflow and data preparation questions
#353 opened Jan 26, 2025 by TKsh6
1
find-motifs --contig failed to parse any bedmethyl records
#349 opened Jan 17, 2025 by Ge0rges
5
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