Update Docker.modis-vcf

docker/applications/modis-vcf/Docker.modis-vcf

@@ -8,19 +8,23 @@ ARG FROM_IMAGE=rapidsai/base
 # Import RAPIDS container as the BASE Image (cuda base image)
 FROM ${FROM_IMAGE}:${RAPIDS_VER}-cuda${CUDA_VER}-py${PYTHON_VER}
 USER root
+
 #-------------------------------------------------------------------------------
 # - 1/12/23  modis-vcf 1.0.0 -initial container built with pyarrow
 # - 7/30/24  modis-vcf 1.0.1 -upgraded numpy to 1.23.3.scipy 1.10.0 requires numpy<1.27.0,>=1.19.5 and numba 0.56.4 requires numpy<1.24,>=1.18. *note ilab-base 6.1.0 has numpy 1.21, weird. 
 # - 11/6/24  modis-vcf 1.2.0 -Request from Roger to install cuML 
 # - 11/13/24 modis-vcf 2.0 -Converting to Docker build format
 #-------------------------------------------------------------------------------
-
 # Ubuntu needs noninteractive to be forced
 ENV DEBIAN_FRONTEND noninteractive
 ENV CPLUS_INCLUDE_PATH="/usr/include/gdal"
 ENV C_INCLUDE_PATH="/usr/include/gdal"
+ENV PYTHONPATH="$PYTHONPATH:/usr/local/ilab"
+ENV PYTHONPATH="$PYTHONPATH:/usr/local/ilab/modis_vcf"
 
+#-------------------------------------------------------------------------------
 # System dependencies
+#-------------------------------------------------------------------------------
 RUN apt-get update && \
     apt-get -y install software-properties-common && \
     add-apt-repository ppa:ubuntugis/ubuntugis-unstable && \
@@ -62,7 +66,9 @@ RUN apt-get update && \
     apt-get -y autoremove && \
     rm -rf /var/cache/apt /var/lib/apt/lists/*
 
-
+#-------------------------------------------------------------------------------
+# Install shiftc
+#-------------------------------------------------------------------------------
 # Install shiftc
 WORKDIR /app
 RUN git clone --single-branch --branch master https://github.com/pkolano/shift.git && \
@@ -80,7 +86,9 @@ RUN git clone --single-branch --branch master https://github.com/pkolano/shift.g
     locale-gen en_US.UTF-8 && \
     rm -rf /app
 
-# Pip
+#-------------------------------------------------------------------------------
+# Python dependencies
+#-------------------------------------------------------------------------------
 RUN pip install \
     numpy \
     certifi \
@@ -99,6 +107,15 @@ RUN pip install \
     GDAL \
     flake8
 
+#-------------------------------------------------------------------------------
+# Application
+#-------------------------------------------------------------------------------
+RUN mkdir -p "/usr/local/ilab" && \
+    git clone --single-branch --branch main https://github.com/nasa-nccs-hpda/core.git \
+        /usr/local/ilab/core && \
+    git clone --single-branch --branch main https://github.com/nasa-nccs-hpda/modis_vcf.git \
+        /usr/local/ilab/modis_vcf
+
 HEALTHCHECK NONE
 ENTRYPOINT []
 CMD ["/bin/bash"]