Merge pull request #8 from nasa-nccs-hpda/hotfix-tilesize

Hotfix tilesize

README.md

@@ -18,15 +18,23 @@ and performing time series analysis using the CCDC algorithm
 
 ## Quickstart
 
-  > module load singularity
-  >
-  > singularity shell -B <WORKING_DIR>:<DATA_PATH> <path-to>/ilab-vhr-toolkit
-  > 
-  > cd <path_to>/pyCCDC
-  > 
-  > python simpleCCDC.py
-
-
+```bash
+module load singularity
+singularity shell -B <WORKING_DIR>:<DATA_PATH> <path-to>/ilab-vhr-toolkit
+cd <path_to>/pyCCDC
+python simpleCCDC.py
+```
+
+## Development Example
+
+When testing and developing with different configurations, the following
+command can serve as a base to test new changes.
+
+```bash
+python view/ccdc_cli.py --gee_config gee_config.json \
+--footprint_file "/explore/nobackup/projects/ilab/scratch/vhr-toolkit/WV02_20150911_M1BS_1030010049148A00_sr_02m.tif" \
+--output_path /explore/nobackup/projects/ilab/scratch/vhr-toolkit/ccdc-test
+```
 
 ## Contributors
 

model/CCDCPipeline.py

@@ -97,7 +97,7 @@ def gen_single_image(
                 outfile=None,
                 scale=30,
                 max_tile_size=0.5,
-                image_dtype='uint16'
+                image_dtype='int16'
             ):
         # TODO: Implement user-specified GEE account authentication.
         # Currently using local credentials for testing purposes.
@@ -143,7 +143,7 @@ def gen_single_image(
 
     def post_proc(self, file, crs):
         raster = rxr.open_rasterio(file)
-        raster = raster.rio.write_nodata(-9999.)
+        raster = raster.rio.write_nodata(-9999)
 
         raster = raster.rio.reproject(f"EPSG:{crs}")
         raster.rio.to_raster(file)

view/ccdc_cli.py

@@ -99,7 +99,7 @@ def genSingleImage(
             outfile='',
             scale=30,
             max_tile_size=0.5,
-            image_dtype='uint16'
+            image_dtype='int16'
         ):
 
     # TODO: Implement user-specified GEE account authentication.