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@naturalis

Naturalis Biodiversity Center

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  1. barcode-constrained-phylogeny barcode-constrained-phylogeny Public

    Pipeline for building topologically-constrained phylogenies from DNA barcode data

    Python 2 3

Repositories

Showing 10 of 176 repositories
  • barcode-constrained-phylogeny Public

    Pipeline for building topologically-constrained phylogenies from DNA barcode data

    naturalis/barcode-constrained-phylogeny’s past year of commit activity
    Python 2 Apache-2.0 3 21 1 Updated Jan 13, 2025
  • sdmdl Public

    Species Distribution Modelling using Deep Learning

    naturalis/sdmdl’s past year of commit activity
    Python 24 MIT 11 4 21 Updated Jan 10, 2025
  • barcode-classify-protax-fungi Public

    Profiling PROTAX-fungi for quick and coarse classification of ITS metabarcoding reads

    naturalis/barcode-classify-protax-fungi’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Jan 10, 2025
  • barcode_validator Public

    Standardized validation of barcodes

    naturalis/barcode_validator’s past year of commit activity
    Python 1 Apache-2.0 5 2 0 Updated Dec 16, 2024
  • barcode-phylogenetic-diversity Public

    Repository for experiments with QIIME-based alpha/beta PD metrics

    naturalis/barcode-phylogenetic-diversity’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Dec 12, 2024
  • edentity-sequencer-qc Public

    scripts for comparing sequencer outputs

    naturalis/edentity-sequencer-qc’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Dec 4, 2024
  • mebioda Public

    Course repository for Methods in Biodiversity Analysis

    naturalis/mebioda’s past year of commit activity
    HTML 21 MIT 82 7 0 Updated Nov 28, 2024
  • BGE-gaplist Public

    Pipeline for generating and updating the BGE gap list

    naturalis/BGE-gaplist’s past year of commit activity
    Perl 0 Apache-2.0 0 0 0 Updated Nov 21, 2024
  • edentity-metabarcoding-phylodiv Public

    Shell scripts for prototyping a QIIME2

    naturalis/edentity-metabarcoding-phylodiv’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Nov 13, 2024
  • evobio2 Public

    EvBio2 UL computer practicum

    naturalis/evobio2’s past year of commit activity
    0 GPL-3.0 0 0 0 Updated Sep 6, 2024
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