Tests

annotations: use `GITHUT_PAT` env variable for Github queries if avail. #38

	name: Tests

	on: [push, pull_request]

	jobs:
	build:
	runs-on: ubuntu-latest
	strategy:
	matrix:
	python-version:
	- "3.9"
	- "3.10"
	- "3.11"
	# - "3.12"
	steps:
	# This cancels any such job that is still runnning
	- name: Cancel Previous Runs
	uses: styfle/cancel-workflow-action@0.6.0
	with:
	access_token: ${{ github.token }}
	- uses: actions/checkout@v4
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install Linux libraries
	run: \|
	sudo apt-get install -y libdbus-1-3 libxkbcommon-x11-0 libxcb-icccm4 \
	libxcb-image0 libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 \
	libxcb-xinerama0 libxcb-xinput0 libxcb-xfixes0
	- name: Install dependencies
	run: \|
	pip install --upgrade pip
	pip install zstandard==0.16.0
	pip install numpy
	pip install flybrains
	pip install pyarrow
	- name: Install fafbseb
	run: pip install -e .
	- name: Report dependency versions
	run: pip freeze -r requirements.txt
	- name: Set FlyWire CAVE token for tests
	env:
	CAVE_TOKEN: ${{ secrets.cave_token }}
	run: \|
	python -c "from fafbseg import flywire;flywire.set_chunkedgraph_secret('$CAVE_TOKEN')"
	- name: Test with pytest
	run: \|
	export NAVIS_HEADLESS=TRUE
	pytest --verbose

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