bioinformatics_resources

Resources for learning bioinformatics

1. Resources on bioinformatics

   https://informatics.fas.harvard.edu/?p=813

2. Open source software

   https://cytoscape.org/

   https://software.broadinstitute.org/morpheus/

3. WGCNA

   https://hms-dbmi.github.io/scw/WGCNA.html

4. DeSeq2

   https://bitbucket.org/neelsoumya/deseq2_diffexpression_vignette/

5. Single-cell sequencing tutorial

   https://github.com/hemberg-lab/scRNA.seq.course

   https://www.youtube.com/watch?v=thHgPqQpkE4

6. Scater for analysis of single-cell sequencing data

   https://bioconductor.org/packages/release/bioc/vignettes/scater/inst/doc/overview.html

7. SC3 for single-cell clustering

   https://github.com/hemberg-lab/SC3

8. Publicly available genomic data (bulk and single cell)

   https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE12251

   https://singlecell.broadinstitute.org/single_cell

9. GWAS and eQTL data

   http://htmlpreview.github.io/?https://github.com/kauralasoo/eQTL-Catalogue-resources/blob/master/scripts/tabix_use_case.html

10. My (Soumya Banerjee) code and bioinformatics resources

    https://sites.google.com/site/neelsoumya/software

    https://sites.google.com/site/neelsoumya/research-resources/bioinformatics