Update schema.yml #13
validate_yaml.yml
on: pull_request
generate_outputs
7s
Annotations
10 errors and 2 warnings
generate_outputs
❌ failed to parse YAML file: dic/_software_names_auto.yaml
[{"path":"ABAQUS","message":"ABAQUS is not present in schema"},{"path":"ABRicate","message":"ABRicate is not present in schema"},{"path":"ABySS","message":"ABySS is not present in schema"},{"path":"ACTC","message":"ACTC is not present in schema"},{"path":"AGAT","message":"AGAT is not present in schema"},{"path":"AGE","message":"AGE is not present in schema"},{"path":"AMOS","message":"AMOS is not present in schema"},{"path":"AMRFinderPlus","message":"AMRFinderPlus is not present in schema"},{"path":"ANIcalculator","message":"ANIcalculator is not present in schema"},{"path":"ANNOVAR","message":"ANNOVAR is not present in schema"},{"path":"ANSYS","message":"ANSYS is not present in schema"},{"path":"ANTLR","message":"ANTLR is not present in schema"},{"path":"ANTS","message":"ANTS is not present in schema"},{"path":"ANTs","message":"ANTs is not present in schema"},{"path":"AOCC","message":"AOCC is not present in schema"},{"path":"AOCL-BLIS","message":"AOCL-BLIS is not present in schema"},{"path":"AOCL-FFTW","message":"AOCL-FFTW is not present in schema"},{"path":"AOCL-ScaLAPACK","message":"AOCL-ScaLAPACK is not present in schema"},{"path":"APR","message":"APR is not present in schema"},{"path":"APR-util","message":"APR-util is not present in schema"},{"path":"ARCSI","message":"ARCSI is not present in schema"},{"path":"ARIBA","message":"ARIBA is not present in schema"},{"path":"ATK","message":"ATK is not present in schema"},{"path":"AUGUSTUS","message":"AUGUSTUS is not present in schema"},{"path":"AdapterRemoval","message":"AdapterRemoval is not present in schema"},{"path":"Advisor","message":"Advisor is not present in schema"},{"path":"AlphaFold","message":"AlphaFold is not present in schema"},{"path":"AlphaFold2DB","message":"AlphaFold2DB is not present in schema"},{"path":"AlwaysIntelMKL","message":"AlwaysIntelMKL is not present in schema"},{"path":"Amber","message":"Amber is not present in schema"},{"path":"Anaconda2","message":"Anaconda2 is not present in schema"},{"path":"Anaconda3","message":"Anaconda3 is not present in schema"},{"path":"Apptainer","message":"Apptainer is not present in schema"},{"path":"Armadillo","message":"Armadillo is not present in schema"},{"path":"Arrow","message":"Arrow is not present in schema"},{"path":"Aspera-CLI","message":"Aspera-CLI is not present in schema"},{"path":"Augustus","message":"Augustus is not present in schema"},{"path":"AutoDock-GPU","message":"AutoDock-GPU is not present in schema"},{"path":"AutoDock_Vina","message":"AutoDock_Vina is not present in schema"},{"path":"BBMap","message":"BBMap is not present in schema"},{"path":"BCFtools","message":"BCFtools is not present in schema"},{"path":"BCL-Convert","message":"BCL-Convert is not present in schema"},{"path":"BEAST","message":"BEAST is not present in schema"},{"path":"BEDOPS","message":"BEDOPS is not present in schema"},{"path":"BEDTools","message":"BEDTools is not present in schema"},{"path":"BEEF","message":"BEEF is not present in schema"},{"path":"BLASR","message":"BLASR is not present in schema"},{"path":"BLAST","message":"BLAST is not present in schema"},{"path":"BLASTDB","message":"BLASTDB is not present in schema"},{"path":"BLAT","message":"BLAT is not present in schema"},{"path":"BLIS","message":"BLIS is not present in schema"},{"path":"BOLT-LMM","message":"BOLT-LMM is not present in schema"},{"path":"BRAKER","message":"BRAKER is not present in schema"},{"path":"BUSCO","message":"BUSCO is not present in schema"},{"path":"BWA","message":"BWA is not present in schema"},{"path":"BamTools","message":"BamTools is not present in schema"},{"path":"Bandage","message":"Bandage is not present in schema"},{"path":"Basilisk","message":"Basilisk is not present in schema"},{"path":"BayPass","message":"BayPass is not present in schema"},{"path":"BayeScan","message":"BayeScan is not present in schema"},{"path":"BayesAss","message":"BayesAss is not present in schema"},{"path":"Bazel","message":"Bazel is not present in schema"},{"path":"Beagle","message":"Beagle is not present
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generate_outputs
❌ failed to parse YAML file: dic/acronyms.yaml
[{"path":"ACL","message":"ACL is not present in schema"},{"path":"ATL","message":"ATL is not present in schema"},{"path":"CLI","message":"CLI is not present in schema"},{"path":"CMIP","message":"CMIP is not present in schema"},{"path":"CPU","message":"CPU is not present in schema"},{"path":"CRI","message":"CRI is not present in schema"},{"path":"CRLF","message":"CRLF is not present in schema"},{"path":"CUDA","message":"CUDA is not present in schema"},{"path":"CWL","message":"CWL is not present in schema"},{"path":"DTN","message":"DTN is not present in schema"},{"path":"DVS","message":"DVS is not present in schema"},{"path":"EOL","message":"EOL is not present in schema"},{"path":"FTE","message":"FTE is not present in schema"},{"path":"GDB","message":"GDB is not present in schema"},{"path":"GDC","message":"GDC is not present in schema"},{"path":"GNU","message":"GNU is not present in schema"},{"path":"GPFS","message":"GPFS is not present in schema"},{"path":"GPG","message":"GPG is not present in schema"},{"path":"GPGPU","message":"GPGPU is not present in schema"},{"path":"GPU","message":"GPU is not present in schema"},{"path":"GUI","message":"GUI is not present in schema"},{"path":"HCS","message":"HCS is not present in schema"},{"path":"HDF","message":"HDF is not present in schema"},{"path":"HGX","message":"HGX is not present in schema"},{"path":"HPC","message":"HPC is not present in schema"},{"path":"HTTPS","message":"HTTPS is not present in schema"},{"path":"IBM","message":"IBM is not present in schema"},{"path":"JSON","message":"JSON is not present in schema"},{"path":"KNP","message":"KNP is not present in schema"},{"path":"LF","message":"LF is not present in schema"},{"path":"LTS","message":"LTS is not present in schema"},{"path":"MBIE","message":"MBIE is not present in schema"},{"path":"MD5","message":"MD5 is not present in schema"},{"path":"MPI","message":"MPI is not present in schema"},{"path":"MWLR","message":"MWLR is not present in schema"},{"path":"NIWA","message":"NIWA is not present in schema"},{"path":"NZ","message":"NZ is not present in schema"},{"path":"NZD","message":"NZD is not present in schema"},{"path":"NZDT","message":"NZDT is not present in schema"},{"path":"NZST","message":"NZST is not present in schema"},{"path":"NeSI","message":"NeSI is not present in schema"},{"path":"OOM","message":"OOM is not present in schema"},{"path":"OSX","message":"OSX is not present in schema"},{"path":"PCIe","message":"PCIe is not present in schema"},{"path":"PFR","message":"PFR is not present in schema"},{"path":"POSIX","message":"POSIX is not present in schema"},{"path":"QoS","message":"QoS is not present in schema"},{"path":"REANNZ","message":"REANNZ is not present in schema"},{"path":"SCP","message":"SCP is not present in schema"},{"path":"SFTP","message":"SFTP is not present in schema"},{"path":"SHA-1","message":"SHA-1 is not present in schema"},{"path":"SHA-256","message":"SHA-256 is not present in schema"},{"path":"SIF","message":"SIF is not present in schema"},{"path":"SSH","message":"SSH is not present in schema"},{"path":"SSHFS","message":"SSHFS is not present in schema"},{"path":"SSIF","message":"SSIF is not present in schema"},{"path":"Spectrum Scale","message":"Spectrum Scale is not present in schema"},{"path":"TRES","message":"TRES is not present in schema"},{"path":"TZ","message":"TZ is not present in schema"},{"path":"UDF","message":"UDF is not present in schema"},{"path":"UI","message":"UI is not present in schema"},{"path":"UTF","message":"UTF is not present in schema"},{"path":"UUID","message":"UUID is not present in schema"},{"path":"UoA","message":"UoA is not present in schema"},{"path":"VM","message":"VM is not present in schema"},{"path":"VNC","message":"VNC is not present in schema"},{"path":"VPN","message":"VPN is not present in schema"},{"path":"WCRP","message":"WCRP is not present in schema"},{"path":"WSL","message":"WSL is not present in schema"},{"path":"XVFB","message":"XVFB is not present in schema"},{"path":"YAML","message":"YAML is not present
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generate_outputs
❌ failed to parse YAML file: dic/commands.yaml
[{"path":"Nano","message":"Nano is not present in schema"},{"path":"srun","message":"srun is not present in schema"}]
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generate_outputs
❌ failed to parse YAML file: dic/inexplicably-absent.yaml
[{"path":"admonition","message":"admonition is not present in schema"},{"path":"analytics","message":"analytics is not present in schema"},{"path":"annum","message":"annum is not present in schema"},{"path":"collapsable","message":"collapsable is not present in schema"},{"path":"customisable","message":"customisable is not present in schema"},{"path":"customisations","message":"customisations is not present in schema"},{"path":"in situ","message":"in situ is not present in schema"},{"path":"parallelise","message":"parallelise is not present in schema"},{"path":"programmatically","message":"programmatically is not present in schema"},{"path":"programme","message":"programme is not present in schema"},{"path":"reproducibility","message":"reproducibility is not present in schema"},{"path":"requeued","message":"requeued is not present in schema"},{"path":"unallocated","message":"unallocated is not present in schema"},{"path":"unmount","message":"unmount is not present in schema"}]
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generate_outputs
❌ failed to parse YAML file: dic/jargon_bio.yaml
[{"path":"basecaller","message":"basecaller is not present in schema"},{"path":"biomolecule","message":"biomolecule is not present in schema"},{"path":"genomic","message":"genomic is not present in schema"},{"path":"genotype","message":"genotype is not present in schema"},{"path":"genotyping","message":"genotyping is not present in schema"},{"path":"metagenomic","message":"metagenomic is not present in schema"},{"path":"phylogenetic","message":"phylogenetic is not present in schema"},{"path":"transcriptome","message":"transcriptome is not present in schema"}]
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generate_outputs
❌ failed to parse YAML file: dic/jargon_cs.yaml
[{"path":"Bourne","message":"Bourne is not present in schema"},{"path":"Gbps","message":"Gbps is not present in schema"},{"path":"PowerShell","message":"PowerShell is not present in schema"},{"path":"SquashFS","message":"SquashFS is not present in schema"},{"path":"XC","message":"XC is not present in schema"},{"path":"authenticator","message":"authenticator is not present in schema"},{"path":"backplane","message":"backplane is not present in schema"},{"path":"benchmark","message":"benchmark is not present in schema"},{"path":"benchmarking","message":"benchmarking is not present in schema"},{"path":"checkpointing","message":"checkpointing is not present in schema"},{"path":"checksum","message":"checksum is not present in schema"},{"path":"chiplets","message":"chiplets is not present in schema"},{"path":"config","message":"config is not present in schema"},{"path":"craype","message":"craype is not present in schema"},{"path":"dataset","message":"dataset is not present in schema"},{"path":"dereference","message":"dereference is not present in schema"},{"path":"eScience","message":"eScience is not present in schema"},{"path":"exe","message":"exe is not present in schema"},{"path":"executable","message":"executable is not present in schema"},{"path":"fairshare","message":"fairshare is not present in schema"},{"path":"fileset","message":"fileset is not present in schema"},{"path":"filesystem","message":"filesystem is not present in schema"},{"path":"glob","message":"glob is not present in schema"},{"path":"globbing","message":"globbing is not present in schema"},{"path":"hyperthreaded","message":"hyperthreaded is not present in schema"},{"path":"hyperthreading","message":"hyperthreading is not present in schema"},{"path":"inode","message":"inode is not present in schema"},{"path":"libio","message":"libio is not present in schema"},{"path":"localhost","message":"localhost is not present in schema"},{"path":"microarchitecture","message":"microarchitecture is not present in schema"},{"path":"multithread","message":"multithread is not present in schema"},{"path":"multithreaded","message":"multithreaded is not present in schema"},{"path":"multithreading","message":"multithreading is not present in schema"},{"path":"namespace","message":"namespace is not present in schema"},{"path":"nav","message":"nav is not present in schema"},{"path":"nobackup","message":"nobackup is not present in schema"},{"path":"parallelisation","message":"parallelisation is not present in schema"},{"path":"precompiled","message":"precompiled is not present in schema"},{"path":"profiler","message":"profiler is not present in schema"},{"path":"repo","message":"repo is not present in schema"},{"path":"runtime","message":"runtime is not present in schema"},{"path":"scalable","message":"scalable is not present in schema"},{"path":"setgid","message":"setgid is not present in schema"},{"path":"stderr","message":"stderr is not present in schema"},{"path":"stdin","message":"stdin is not present in schema"},{"path":"stdout","message":"stdout is not present in schema"},{"path":"subdirectory","message":"subdirectory is not present in schema"},{"path":"sudo","message":"sudo is not present in schema"},{"path":"symlink","message":"symlink is not present in schema"},{"path":"templating","message":"templating is not present in schema"},{"path":"tmpfs","message":"tmpfs is not present in schema"},{"path":"toolchain","message":"toolchain is not present in schema"},{"path":"tooltip","message":"tooltip is not present in schema"},{"path":"validator","message":"validator is not present in schema"},{"path":"vectorisation","message":"vectorisation is not present in schema"},{"path":"walltime","message":"walltime is not present in schema"}]
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generate_outputs
❌ failed to parse YAML file: dic/jargon_eng.yaml
[{"path":"CAE","message":"CAE is not present in schema"},{"path":"CFD","message":"CFD is not present in schema"},{"path":"FEA","message":"FEA is not present in schema"}]
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generate_outputs
❌ failed to parse YAML file: dic/misc.yaml
[{"path":"ctrl","message":"ctrl is not present in schema"},{"path":"deprioritised","message":"deprioritised is not present in schema"},{"path":"lockdown","message":"lockdown is not present in schema"},{"path":"onboarding","message":"onboarding is not present in schema"},{"path":"rollout","message":"rollout is not present in schema"}]
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generate_outputs
❌ failed to parse YAML file: dic/proper_names.yaml
[{"path":"AgResearch","message":"AgResearch is not present in schema"},{"path":"Allinea","message":"Allinea is not present in schema"},{"path":"Amdahl","message":"Amdahl is not present in schema"},{"path":"Aotearoa","message":"Aotearoa is not present in schema"},{"path":"Apache","message":"Apache is not present in schema"},{"path":"Broadwell","message":"Broadwell is not present in schema"},{"path":"Bruijn","message":"Bruijn is not present in schema"},{"path":"Centos","message":"Centos is not present in schema"},{"path":"Easybuild","message":"Easybuild is not present in schema"},{"path":"GFortran","message":"GFortran is not present in schema"},{"path":"GitHub","message":"GitHub is not present in schema"},{"path":"GitLab","message":"GitLab is not present in schema"},{"path":"Glib","message":"Glib is not present in schema"},{"path":"Globus","message":"Globus is not present in schema"},{"path":"GlobusID","message":"GlobusID is not present in schema"},{"path":"InfiniBand","message":"InfiniBand is not present in schema"},{"path":"Landcare","message":"Landcare is not present in schema"},{"path":"Lmod","message":"Lmod is not present in schema"},{"path":"Marsden","message":"Marsden is not present in schema"},{"path":"Milan","message":"Milan is not present in schema"},{"path":"New Zealander","message":"New Zealander is not present in schema"},{"path":"Nvidia","message":"Nvidia is not present in schema"},{"path":"NVLink","message":"NVLink is not present in schema"},{"path":"OMP","message":"OMP is not present in schema"},{"path":"OneDrive","message":"OneDrive is not present in schema"},{"path":"OpenMP","message":"OpenMP is not present in schema"},{"path":"OpenSSH","message":"OpenSSH is not present in schema"},{"path":"OpenSSL","message":"OpenSSL is not present in schema"},{"path":"Otago","message":"Otago is not present in schema"},{"path":"Pletzer","message":"Pletzer is not present in schema"},{"path":"Schrödinger","message":"Schrödinger is not present in schema"},{"path":"Skylake","message":"Skylake is not present in schema"},{"path":"Slurm","message":"Slurm is not present in schema"},{"path":"Tuakiri","message":"Tuakiri is not present in schema"},{"path":"Xeon","message":"Xeon is not present in schema"},{"path":"Xerces","message":"Xerces is not present in schema"},{"path":"Zealander","message":"Zealander is not present in schema"},{"path":"Zendesk","message":"Zendesk is not present in schema"}]
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generate_outputs
❌ failed to parse YAML file: dic/software_names.yaml
[{"path":"WRF","message":"WRF is not present in schema"},{"path":"Fortran","message":"Fortran is not present in schema"},{"path":"MobaXterm","message":"MobaXterm is not present in schema"},{"path":"Conda","message":"Conda is not present in schema"},{"path":"RStudio","message":"RStudio is not present in schema"},{"path":"Cylc","message":"Cylc is not present in schema"},{"path":"DCV","message":"DCV is not present in schema"},{"path":"Dask","message":"Dask is not present in schema"},{"path":"Nanopore","message":"Nanopore is not present in schema"},{"path":"Miniconda","message":"Miniconda is not present in schema"},{"path":"CESM","message":"CESM is not present in schema"},{"path":"WinSCP","message":"WinSCP is not present in schema"},{"path":"MKL","message":"MKL is not present in schema"},{"path":"Nsight","message":"Nsight is not present in schema"},{"path":"OpenACC","message":"OpenACC is not present in schema"},{"path":"MacOS","message":"MacOS is not present in schema"},{"path":"PuTTY","message":"PuTTY is not present in schema"},{"path":"OpenGL","message":"OpenGL is not present in schema"},{"path":"GeneMark","message":"GeneMark is not present in schema"},{"path":"FASTA","message":"FASTA is not present in schema"},{"path":"AOCL","message":"AOCL is not present in schema"},{"path":"Xming","message":"Xming is not present in schema"},{"path":"FENSAP","message":"FENSAP is not present in schema"},{"path":"FASTQ","message":"FASTQ is not present in schema"},{"path":"Bioconductor","message":"Bioconductor is not present in schema"},{"path":"GTK","message":"GTK is not present in schema"},{"path":"LAPACK","message":"LAPACK is not present in schema"},{"path":"Kraken","message":"Kraken is not present in schema"},{"path":"CentOS","message":"CentOS is not present in schema"},{"path":"cron","message":"cron is not present in schema"},{"path":"crontab","message":"crontab is not present in schema"},{"path":"IOBUF","message":"IOBUF is not present in schema"},{"path":"Keycloak","message":"Keycloak is not present in schema"},{"path":"Jinja","message":"Jinja is not present in schema"},{"path":"ImagMagick","message":"ImagMagick is not present in schema"},{"path":"Illumina","message":"Illumina is not present in schema"},{"path":"conda","message":"conda is not present in schema"},{"path":"Jupyter","message":"Jupyter is not present in schema"},{"path":"JupyterHub","message":"JupyterHub is not present in schema"},{"path":"AutoDock","message":"AutoDock is not present in schema"},{"path":"GridRunner","message":"GridRunner is not present in schema"},{"path":"Synda","message":"Synda is not present in schema"},{"path":"PacBio","message":"PacBio is not present in schema"},{"path":"Aspera","message":"Aspera is not present in schema"},{"path":"Keras","message":"Keras is not present in schema"}]
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generate_outputs
error reading .gitignore file: Error: ENOENT: no such file or directory, open '.gitignore'
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generate_outputs
error reading .gitignore file: Error: ENOENT: no such file or directory, open '.gitignore'
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