Merge branch 'master' into devel

netZoo · Mar 8, 2024 · 74c95ee · 74c95ee
2 parents 4b7ad2a + 743c511
commit 74c95ee
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Showing 2 changed files with 6 additions and 7 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,8 +1,8 @@
 Package: netZooR
 Type: Package
 Title: Unified methods for the inference and analysis of gene regulatory networks
-Version: 1.5.17
-Date: 2024-02-29
+Version: 1.5.4
+Date: 2023-09-25
 Authors@R: c(person("Marouen", "Ben Guebila",
 			email = "benguebila@hsph.harvard.edu", role = c("aut","cre"), comment = c(ORCID = "0000-0001-5934-966X")),
 	     person("Tian", "Wang", 
@@ -24,9 +24,8 @@ Description: netZooR unifies the implementations of several Network Zoo methods
 Depends: R (>= 4.2.0),
    igraph,
 	 reticulate,
-	 pandaR,
    matrixcalc,
-   Biobase
+	 pandaR,
 Remotes: 
 	 stan-dev/cmdstanr,
 	 jnpaulson/pandaR, 
@@ -75,7 +74,7 @@ Imports:
     GeneNet,
     loo,
     rARPACK,
-    corpcor,
+    corpcor
     biomaRt,
     downloader,
     edgeR,

diff --git a/NAMESPACE b/NAMESPACE
@@ -5,7 +5,7 @@ export(adj2regulon)
 export(alpaca)
 export(alpacaCrane)
 export(alpacaExtractTopGenes)
-export(annotateFromBiomart)
+export(cobra)
 export(checkMisAnnotation)
 export(checkTissuesToMerge)
 export(cobra)
@@ -50,7 +50,7 @@ export(pandaDiffEdges)
 export(pandaPy)
 export(pandaToAlpaca)
 export(pandaToCondorObject)
-export(plotCMDS)
+export(priorPp)
 export(plotDensity)
 export(plotHeatmap)
 export(priorPp)