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Fixed the Errors in pkgdown Website Build (#323)
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* Added missing references from BLOBFISH and YARN

* Added data for YARN vignettes to YAML reference

* Added documentation generated during pkgdown build

* Changed VignetteIndexEntry fields to match titles in YAML file to address mismatch warnings

* Removed PNG files

* Added the PNG files back

* Added PNG files back in
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taraeicher authored Jul 23, 2024
1 parent 2736933 commit ba43c81
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33 changes: 33 additions & 0 deletions _pkgdown.yml
Original file line number Diff line number Diff line change
Expand Up @@ -116,6 +116,37 @@ reference:
contents:
- runEgret

- title: BLOBFISH
desc: BLOBFISH functions
contents:
- RunBLOBFISH
- GenerateNullPANDADistribution
- BuildSubnetwork
- CalculatePValues
- FindSignificantEdgesForHop
- SignificantBreadthFirstSearch
- FindConnectionsForAllHopCounts
- PlotNetwork

- title: YARN
desc: YARN functions
contents:
- checkMisAnnotation
- checkTissuesToMerge
- filterGenes
- filterLowGenes
- normalizeTissueAware
- annotateFromBiomart
- downloadGTEx
- extractMatrix
- filterMissingGenes
- filterSamples
- plotCMDS
- plotDensity
- plotHeatmap
- qsmooth
- qstats

- title: Plotting functions
desc: function to plot the networks and community structures.
contents:
Expand All @@ -138,3 +169,5 @@ reference:
- mut.ucec
- exon.size
- genes
- Bladder_data
- Skin_data
6 changes: 3 additions & 3 deletions docs/404.html

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4 changes: 2 additions & 2 deletions docs/CONDUCT.html

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4 changes: 2 additions & 2 deletions docs/LICENSE-text.html

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