Add monster desc (#312)

* update documentation

* remove monster tests

* reduce monstr test

* update documentation

* remove diffedge example

* reduce monster tests

* remove spider example

* update monster examples

* remove lioness tests

* remove pada tests

* add citation

* add monster description

R/MONSTER.R

@@ -90,7 +90,8 @@ monsterPrintMonsterAnalysis <- function(x, ...){
 #' to give to indirect compared to direct evidence. The default is 0.5 to give an 
 #' equal weight to direct and indirect evidence.
 #' @param mode A parameter telling whether to build the regulatory networks ('buildNet') or to use provided regulatory networks
-#' ('regNet'). If set to 'regNet', then the parameters motif, ni_method, ni.coefficient.cutoff, and alphaw will be set to NA.
+#' ('regNet'). If set to 'regNet', then the parameters motif, ni_method, ni.coefficient.cutoff, and alphaw will be set to NA. Gene regulatory
+#' networks are supplied in the 'expr' variable as a TF-by-Gene matrix, by concatenating the TF-by-Gene matrices of case and control, expr has size nTFs x 2nGenes.
 #' @export
 #' @import doParallel
 #' @import parallel