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BLOBFISH Implementation #321

Merged
merged 20 commits into from
Jun 28, 2024
Merged

BLOBFISH Implementation #321

merged 20 commits into from
Jun 28, 2024

Commits on May 17, 2024

  1. Added BLOBFISH

    @taraeicher
    taraeicher committed May 17, 2024
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  2. Removed singleton genes in BLOBFISH output

    @taraeicher
    taraeicher committed May 17, 2024
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Commits on May 21, 2024

  1. Added export statement to method for plotting networks

    @taraeicher
    taraeicher committed May 21, 2024
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Commits on May 23, 2024

  1. Added the ability to highlight the 2-hop subnetwork

    @taraeicher
    taraeicher committed May 23, 2024
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Commits on May 28, 2024

  1. Modified null distribution to include entire prior

    @taraeicher
    taraeicher committed May 28, 2024
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  2. Moved the significance testing to the beginning and added FDR adjustment

    @taraeicher
    taraeicher committed May 28, 2024
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  3. Moved calculation of p-values to a separate function

    @taraeicher
    taraeicher committed May 28, 2024
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  4. Updated tests for BLOBFISH

    @taraeicher
    taraeicher committed May 28, 2024
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Commits on May 31, 2024

  1. Added color-coding functionality to the plots

    @taraeicher
    taraeicher committed May 31, 2024
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Commits on Jun 17, 2024

  1. Merge branch 'devel' into BLOBFISH

    @taraeicher
    taraeicher authored Jun 17, 2024
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Commits on Jun 18, 2024

  1. Delete tests/testthat/test-blobfish.R 

    Deleted the test file as requested to see if we are able to build.
    @taraeicher
    taraeicher authored Jun 18, 2024
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Commits on Jun 21, 2024

  1. Fixed devtools::check() warnings and notes

    @taraeicher
    taraeicher committed Jun 21, 2024
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Commits on Jun 25, 2024

  1. First commit

    @taraeicher
    taraeicher committed Jun 25, 2024
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  2. man/cobra.Rd

    @taraeicher
    taraeicher committed Jun 25, 2024
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  3. Merge pull request #1 from taraeicher/BLOBFISH2 

    Merge Fix for Build Warning Messages
    @taraeicher
    taraeicher authored Jun 25, 2024
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Commits on Jun 26, 2024

  1. Added tests back

    @taraeicher
    taraeicher committed Jun 26, 2024
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  2. Fixed warnings in build

    @taraeicher
    taraeicher committed Jun 26, 2024
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  3. Merge branch 'BLOBFISH' of github.com:taraeicher/netZooR into BLOBFISH 

    Merging changes that were made directly to the GitHub repo
    @taraeicher
    taraeicher committed Jun 26, 2024
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  4. Removed local import

    @taraeicher
    taraeicher committed Jun 26, 2024
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  5. Added description of BLOBFISH to the README

    @taraeicher
    taraeicher committed Jun 26, 2024
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