Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Fixed the Errors in pkgdown Website Build #323

Merged
merged 8 commits into from
Jul 23, 2024
Merged

Fixed the Errors in pkgdown Website Build #323

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
8 commits
Select commit Hold shift + click to select a range
190bf03
Added missing references from BLOBFISH and YARN
taraeicher Jul 9, 2024
46f8f06
Added data for YARN vignettes to YAML reference
taraeicher Jul 9, 2024
feade1d
Added documentation generated during pkgdown build
taraeicher Jul 9, 2024
38cfff2
Changed VignetteIndexEntry fields to match titles in YAML file to add…
taraeicher Jul 10, 2024
f008119
Removed PNG files
taraeicher Jul 10, 2024
90c33df
Added the PNG files back
taraeicher Jul 19, 2024
6966fce
Merge branch 'website-build-fix' of github.com:taraeicher/netZooR int…
taraeicher Jul 19, 2024
b9c7780
Added PNG files back in
taraeicher Jul 19, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
33 changes: 33 additions & 0 deletions _pkgdown.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -116,6 +116,37 @@ reference:
contents:
- runEgret

- title: BLOBFISH
desc: BLOBFISH functions
contents:
- RunBLOBFISH
- GenerateNullPANDADistribution
- BuildSubnetwork
- CalculatePValues
- FindSignificantEdgesForHop
- SignificantBreadthFirstSearch
- FindConnectionsForAllHopCounts
- PlotNetwork

- title: YARN
desc: YARN functions
contents:
- checkMisAnnotation
- checkTissuesToMerge
- filterGenes
- filterLowGenes
- normalizeTissueAware
- annotateFromBiomart
- downloadGTEx
- extractMatrix
- filterMissingGenes
- filterSamples
- plotCMDS
- plotDensity
- plotHeatmap
- qsmooth
- qstats

- title: Plotting functions
desc: function to plot the networks and community structures.
contents:
Expand All @@ -138,3 +169,5 @@ reference:
- mut.ucec
- exon.size
- genes
- Bladder_data
- Skin_data
6 changes: 3 additions & 3 deletions docs/404.html
View file
Open in desktop

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

4 changes: 2 additions & 2 deletions docs/CONDUCT.html
View file
Open in desktop

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

4 changes: 2 additions & 2 deletions docs/LICENSE-text.html
View file
Open in desktop

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

Loading
Loading