Breaking changes: major reorganization of netneurotools #168
Workflow file for this run
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| name: netneurotools-tests | |
| on: | |
| workflow_dispatch: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| jobs: | |
| check_style: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Python 3.8 | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.8 | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install ruff | |
| - name: Run style checks | |
| run: ruff . | |
| run_tests: | |
| needs: check_style | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: ['ubuntu-latest'] | |
| python-version: ['3.8', '3.9', '3.10', '3.11', '3.12'] | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Display Python version | |
| run: python -c "import sys; print(sys.version)" | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install pytest pytest-cov | |
| python -m pip install -r requirements.txt | |
| - name: Install netneurotools | |
| run: python -m pip install . | |
| - name: Print netneurotools version | |
| run: python -c "import netneurotools; print(netneurotools.__version__)" | |
| - name: Test submodule import | |
| run: | | |
| cd .. | |
| python -c "from netneurotools import metrics; from netneurotools.datasets import fetch_cammoun2012" | |
| - name: Run tests | |
| run: pytest --doctest-modules --cov=netneurotools --cov-report=xml --junitxml=junit/test-results.xml --verbose --pyargs netneurotools | |
| - name: Upload coverage | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| file: coverage.xml | |
| - name: Upload pytest test results | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: pytest-results-${{ matrix.os }}-${{ matrix.python-version }} | |
| path: junit/test-results.xml |