Merge pull request #92 from justinehansen/fslr4k-transforms

[FIX] Fix medial wall masks for fsLR 4k and 8k surfaces 96ff4f0
netneurolab · Mar 3, 2023 · 4a6b2f9 · 4a6b2f9
1 parent 09da9fe
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diff --git a/.buildinfo b/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
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+config: c3e096b04c81f58013c327b668f45994
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diff --git a/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip b/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip
diff --git a/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip b/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip
diff --git a/_modules/index.html b/_modules/index.html
@@ -3,7 +3,7 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>Overview: module code &mdash; neuromaps 0+untagged.1.g47ea75f documentation</title>
+  <title>Overview: module code &mdash; neuromaps 0+untagged.1.g96ff4f0 documentation</title>
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       <link rel="stylesheet" href="../_static/css/theme.css" type="text/css" />
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@@ -39,7 +39,7 @@
               <img src="../_static/neuromaps_logo.png" class="logo" alt="Logo"/>
           </a>
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-                0+untagged.1.g47ea75f
+                0+untagged.1.g96ff4f0
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diff --git a/_modules/neuromaps/datasets/annotations.html b/_modules/neuromaps/datasets/annotations.html
@@ -3,7 +3,7 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>neuromaps.datasets.annotations &mdash; neuromaps 0+untagged.1.g47ea75f documentation</title>
+  <title>neuromaps.datasets.annotations &mdash; neuromaps 0+untagged.1.g96ff4f0 documentation</title>
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@@ -39,7 +39,7 @@
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+                0+untagged.1.g96ff4f0
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diff --git a/_modules/neuromaps/datasets/atlases.html b/_modules/neuromaps/datasets/atlases.html
@@ -3,7 +3,7 @@
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-  <title>neuromaps.datasets.atlases &mdash; neuromaps 0+untagged.1.g47ea75f documentation</title>
+  <title>neuromaps.datasets.atlases &mdash; neuromaps 0+untagged.1.g96ff4f0 documentation</title>
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@@ -39,7 +39,7 @@
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           </a>
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+                0+untagged.1.g96ff4f0
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diff --git a/_modules/neuromaps/datasets/contributions.html b/_modules/neuromaps/datasets/contributions.html
@@ -3,7 +3,7 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>neuromaps.datasets.contributions &mdash; neuromaps 0+untagged.1.g47ea75f documentation</title>
+  <title>neuromaps.datasets.contributions &mdash; neuromaps 0+untagged.1.g96ff4f0 documentation</title>
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@@ -39,7 +39,7 @@
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           </a>
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-                0+untagged.1.g47ea75f
+                0+untagged.1.g96ff4f0
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diff --git a/_modules/neuromaps/images.html b/_modules/neuromaps/images.html
@@ -3,7 +3,7 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>neuromaps.images &mdash; neuromaps 0+untagged.1.g47ea75f documentation</title>
+  <title>neuromaps.images &mdash; neuromaps 0+untagged.1.g96ff4f0 documentation</title>
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@@ -39,7 +39,7 @@
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           </a>
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-                0+untagged.1.g47ea75f
+                0+untagged.1.g96ff4f0
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diff --git a/_modules/neuromaps/nulls/nulls.html b/_modules/neuromaps/nulls/nulls.html
@@ -3,7 +3,7 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>neuromaps.nulls.nulls &mdash; neuromaps 0+untagged.1.g47ea75f documentation</title>
+  <title>neuromaps.nulls.nulls &mdash; neuromaps 0+untagged.1.g96ff4f0 documentation</title>
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@@ -39,7 +39,7 @@
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+                0+untagged.1.g96ff4f0
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diff --git a/_modules/neuromaps/parcellate.html b/_modules/neuromaps/parcellate.html
@@ -3,7 +3,7 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>neuromaps.parcellate &mdash; neuromaps 0+untagged.1.g47ea75f documentation</title>
+  <title>neuromaps.parcellate &mdash; neuromaps 0+untagged.1.g96ff4f0 documentation</title>
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       <link rel="stylesheet" href="../../_static/css/theme.css" type="text/css" />
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@@ -39,7 +39,7 @@
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           </a>
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+                0+untagged.1.g96ff4f0
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diff --git a/_modules/neuromaps/plotting.html b/_modules/neuromaps/plotting.html
@@ -3,7 +3,7 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>neuromaps.plotting &mdash; neuromaps 0+untagged.1.g47ea75f documentation</title>
+  <title>neuromaps.plotting &mdash; neuromaps 0+untagged.1.g96ff4f0 documentation</title>
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       <link rel="stylesheet" href="../../_static/css/theme.css" type="text/css" />
       <link rel="stylesheet" href="../../_static/sg_gallery.css" type="text/css" />
@@ -39,7 +39,7 @@
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           </a>
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-                0+untagged.1.g47ea75f
+                0+untagged.1.g96ff4f0
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diff --git a/_modules/neuromaps/points.html b/_modules/neuromaps/points.html
@@ -3,7 +3,7 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>neuromaps.points &mdash; neuromaps 0+untagged.1.g47ea75f documentation</title>
+  <title>neuromaps.points &mdash; neuromaps 0+untagged.1.g96ff4f0 documentation</title>
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@@ -39,7 +39,7 @@
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           </a>
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+                0+untagged.1.g96ff4f0
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diff --git a/_modules/neuromaps/resampling.html b/_modules/neuromaps/resampling.html
@@ -3,7 +3,7 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>neuromaps.resampling &mdash; neuromaps 0+untagged.1.g47ea75f documentation</title>
+  <title>neuromaps.resampling &mdash; neuromaps 0+untagged.1.g96ff4f0 documentation</title>
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       <link rel="stylesheet" href="../../_static/css/theme.css" type="text/css" />
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@@ -39,7 +39,7 @@
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           </a>
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+                0+untagged.1.g96ff4f0
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diff --git a/_modules/neuromaps/stats.html b/_modules/neuromaps/stats.html
@@ -3,7 +3,7 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>neuromaps.stats &mdash; neuromaps 0+untagged.1.g47ea75f documentation</title>
+  <title>neuromaps.stats &mdash; neuromaps 0+untagged.1.g96ff4f0 documentation</title>
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@@ -39,7 +39,7 @@
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+                0+untagged.1.g96ff4f0
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diff --git a/_modules/neuromaps/transforms.html b/_modules/neuromaps/transforms.html
@@ -3,7 +3,7 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>neuromaps.transforms &mdash; neuromaps 0+untagged.1.g47ea75f documentation</title>
+  <title>neuromaps.transforms &mdash; neuromaps 0+untagged.1.g96ff4f0 documentation</title>
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       <link rel="stylesheet" href="../../_static/css/theme.css" type="text/css" />
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@@ -39,7 +39,7 @@
               <img src="../../_static/neuromaps_logo.png" class="logo" alt="Logo"/>
           </a>
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-                0+untagged.1.g47ea75f
+                0+untagged.1.g96ff4f0
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diff --git a/_sources/auto_examples/plot_fetch_datasets.rst.txt b/_sources/auto_examples/plot_fetch_datasets.rst.txt
@@ -53,7 +53,7 @@ function that can fetch any of the atlases provided with ``neuromaps``:
  .. code-block:: none
 
     Downloading data from https://files.osf.io/v1/resources/4mw3a/providers/osfstorage/60b684b53a6df1021bd4df2d ...
-     ...done. (1 seconds, 0 min)
+     ...done. (2 seconds, 0 min)
     Extracting data from /home/runner/neuromaps-data/ac53e497d7d6c6379ee7bd7bda6e0267/fsLR32k.tar.gz..... done.
     dict_keys(['midthickness', 'inflated', 'veryinflated', 'sphere', 'medial', 'sulc', 'vaavg'])
 
@@ -306,7 +306,7 @@ information please refer to the :ref:`API reference <ref_datasets>`.
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** ( 0 minutes  1.840 seconds)
+   **Total running time of the script:** ( 0 minutes  3.662 seconds)
 
 
 .. _sphx_glr_download_auto_examples_plot_fetch_datasets.py:

diff --git a/_sources/auto_examples/plot_spatial_nulls.rst.txt b/_sources/auto_examples/plot_spatial_nulls.rst.txt
@@ -108,7 +108,7 @@ The data returned will always be pre-loaded nibabel image instances:
     Downloading data from https://files.osf.io/v1/resources/4mw3a/providers/osfstorage/60b684c03a6df1020ed525f6 ...
      ...done. (1 seconds, 0 min)
     Extracting data from /home/runner/neuromaps-data/529deda7a30dc28b5106317477efbaf2/regfusion.tar.gz..... done.
-    (<nibabel.gifti.gifti.GiftiImage object at 0x7f864f14a690>, <nibabel.gifti.gifti.GiftiImage object at 0x7f864f5356d0>) (<nibabel.gifti.gifti.GiftiImage object at 0x7f864edc65d0>, <nibabel.gifti.gifti.GiftiImage object at 0x7f864ece5310>)
+    (<nibabel.gifti.gifti.GiftiImage object at 0x7fcafd1754d0>, <nibabel.gifti.gifti.GiftiImage object at 0x7fcafd566310>) (<nibabel.gifti.gifti.GiftiImage object at 0x7fcb0cdf0790>, <nibabel.gifti.gifti.GiftiImage object at 0x7fcafd587110>)
 
 
 
@@ -173,7 +173,7 @@ function so we use the :func:`neuromaps.images.load_data` utility.)
  .. code-block:: none
 
     Downloading data from https://files.osf.io/v1/resources/4mw3a/providers/osfstorage/60b684ab9096b7021b63cf6b ...
-     ...done. (1 seconds, 0 min)
+     ...done. (2 seconds, 0 min)
     Extracting data from /home/runner/neuromaps-data/6e43ea0419f74680d0863fb09ee53700/fsaverage10k.tar.gz..... done.
     (20484, 100)
 
@@ -221,7 +221,7 @@ null maps; they have (nearly) identical function signatures, so refer to the
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** ( 0 minutes  6.517 seconds)
+   **Total running time of the script:** ( 0 minutes  7.337 seconds)
 
 
 .. _sphx_glr_download_auto_examples_plot_spatial_nulls.py:

diff --git a/_sources/auto_examples/sg_execution_times.rst.txt b/_sources/auto_examples/sg_execution_times.rst.txt
@@ -5,10 +5,10 @@
 
 Computation times
 =================
-**00:08.357** total execution time for **auto_examples** files:
+**00:10.999** total execution time for **auto_examples** files:
 
 +-----------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_plot_spatial_nulls.py` (``plot_spatial_nulls.py``)   | 00:06.517 | 0.0 MB |
+| :ref:`sphx_glr_auto_examples_plot_spatial_nulls.py` (``plot_spatial_nulls.py``)   | 00:07.337 | 0.0 MB |
 +-----------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_plot_fetch_datasets.py` (``plot_fetch_datasets.py``) | 00:01.840 | 0.0 MB |
+| :ref:`sphx_glr_auto_examples_plot_fetch_datasets.py` (``plot_fetch_datasets.py``) | 00:03.662 | 0.0 MB |
 +-----------------------------------------------------------------------------------+-----------+--------+
diff --git a/_static/documentation_options.js b/_static/documentation_options.js
@@ -1,6 +1,6 @@
 var DOCUMENTATION_OPTIONS = {
     URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'),
-    VERSION: '0+untagged.1.g47ea75f',
+    VERSION: '0+untagged.1.g96ff4f0',
     LANGUAGE: 'en',
     COLLAPSE_INDEX: false,
     BUILDER: 'html',

diff --git a/api.html b/api.html
@@ -4,7 +4,7 @@
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   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>Reference API &mdash; neuromaps 0+untagged.1.g47ea75f documentation</title>
+  <title>Reference API &mdash; neuromaps 0+untagged.1.g96ff4f0 documentation</title>
       <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
       <link rel="stylesheet" href="_static/sg_gallery.css" type="text/css" />
@@ -42,7 +42,7 @@
               <img src="_static/neuromaps_logo.png" class="logo" alt="Logo"/>
           </a>
               <div class="version">
-                0+untagged.1.g47ea75f
+                0+untagged.1.g96ff4f0
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diff --git a/auto_examples/index.html b/auto_examples/index.html
@@ -4,7 +4,7 @@
   <meta charset="utf-8" /><meta name="generator" content="Docutils 0.18.1: http://docutils.sourceforge.net/" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>Examples &mdash; neuromaps 0+untagged.1.g47ea75f documentation</title>
+  <title>Examples &mdash; neuromaps 0+untagged.1.g96ff4f0 documentation</title>
       <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="../_static/css/theme.css" type="text/css" />
       <link rel="stylesheet" href="../_static/sg_gallery.css" type="text/css" />
@@ -42,7 +42,7 @@
               <img src="../_static/neuromaps_logo.png" class="logo" alt="Logo"/>
           </a>
               <div class="version">
-                0+untagged.1.g47ea75f
+                0+untagged.1.g96ff4f0
               </div>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">

diff --git a/auto_examples/plot_fetch_datasets.html b/auto_examples/plot_fetch_datasets.html
@@ -4,7 +4,7 @@
   <meta charset="utf-8" /><meta name="generator" content="Docutils 0.18.1: http://docutils.sourceforge.net/" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>Fetching atlases and annotations &mdash; neuromaps 0+untagged.1.g47ea75f documentation</title>
+  <title>Fetching atlases and annotations &mdash; neuromaps 0+untagged.1.g96ff4f0 documentation</title>
       <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="../_static/css/theme.css" type="text/css" />
       <link rel="stylesheet" href="../_static/sg_gallery.css" type="text/css" />
@@ -42,7 +42,7 @@
               <img src="../_static/neuromaps_logo.png" class="logo" alt="Logo"/>
           </a>
               <div class="version">
-                0+untagged.1.g47ea75f
+                0+untagged.1.g96ff4f0
               </div>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
@@ -111,7 +111,7 @@
 </pre></div>
 </div>
 <div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Downloading data from https://files.osf.io/v1/resources/4mw3a/providers/osfstorage/60b684b53a6df1021bd4df2d ...
- ...done. (1 seconds, 0 min)
+ ...done. (2 seconds, 0 min)
 Extracting data from /home/runner/neuromaps-data/ac53e497d7d6c6379ee7bd7bda6e0267/fsLR32k.tar.gz..... done.
 dict_keys([&#39;midthickness&#39;, &#39;inflated&#39;, &#39;veryinflated&#39;, &#39;sphere&#39;, &#39;medial&#39;, &#39;sulc&#39;, &#39;vaavg&#39;])
 </pre></div>
@@ -218,7 +218,7 @@
 <p>And that’s it! This example provided a quick overview on how to fetch the
 various atlases and datasets provided with <code class="docutils literal notranslate"><span class="pre">neuromaps</span></code>. For more
 information please refer to the <a class="reference internal" href="../api.html#ref-datasets"><span class="std std-ref">API reference</span></a>.</p>
-<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> ( 0 minutes  1.840 seconds)</p>
+<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> ( 0 minutes  3.662 seconds)</p>
 <div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-plot-fetch-datasets-py">
 <div class="sphx-glr-download sphx-glr-download-python docutils container">
 <p><a class="reference download internal" download="" href="../_downloads/a04ac8d81d8fed9e456dd9e2eb4c4519/plot_fetch_datasets.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">plot_fetch_datasets.py</span></code></a></p>