Essential code for manuscript "Low-dimensional structure of fMRI activity aligns with vigilance" We may continue to update this repository by adding more code.
This repository is not standalone, and depends on following open-source MATLAB and Python toolboxes:
Mo Chen (2021). EM Algorithm for Gaussian Mixture Model (EM GMM), MATLAB Central File Exchange
Stephen (2021). Natural-Order Filename Sort, MATLAB Central File Exchange
Charles (2021). cbrewer : colorbrewer schemes for Matlab, MATLAB Central File Exchange
McInnes, Leland, and John Healy. UMAP: Uniform Manifold Approximation and Projection for Dimension Reduction. arXiv:1802.03426.
Complex network measures of brain connectivity: Uses and interpretations. Rubinov M, Sporns O (2010) NeuroImage 52:1059-69.