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@neurobagel

Neurobagel

An ecosystem for distributed dataset harmonization and search.

👋 Welcome to Neurobagel! 🧠🥯

Our goal with the Neurobagel project is to provide a way for researchers and other data users to define and find cohorts of individuals across datasets. Not all useful and important data can be openly shared or are allowed to be uploaded to remote servers. Our approach is to ask data providers to describe their data with metadata, so that we can let others find out about the data without having direct access to them.

We are building tools with the goal of making the annotation, integration, and searching of these easier. This project is still relatively young, but we are excited to get this into the hands of people and hope that it will be useful. The project originated from the ORIGAMI lab with the Douglas Hospital and support from many other projects, including ReproNim and NeuroHub.

For more information, check out our:

Come say hello!

Contacts: Sebastian Urchs and JB Poline

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  1. annotation_tool annotation_tool Public

    JavaScript 3 6

  2. api api Public

    Python 4 3

  3. query-tool query-tool Public

    User interface for searching across Neurobagel graph

    TypeScript 2 1

  4. bagel-cli bagel-cli Public

    Command line tool for Neurobagel data parsing and annotation

    Python 2 5

  5. documentation documentation Public

    The neurobagel documentation

    JavaScript 10 6

  6. federation-api federation-api Public

    REST API for query federation over multiple Neurobagel graph databases

    Python

Repositories

Showing 10 of 32 repositories
  • upptime Public

    Status dashboard of services hosted directly by Neurobagel

    neurobagel/upptime’s past year of commit activity
    Markdown 0 MIT 0 2 0 Updated Nov 10, 2024
  • neurobagel/workflows’s past year of commit activity
    0 MIT 1 9 3 Updated Nov 8, 2024
  • apis Public

    Our APIs

    neurobagel/apis’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 8, 2024
  • query-tool Public

    User interface for searching across Neurobagel graph

    neurobagel/query-tool’s past year of commit activity
    TypeScript 2 MIT 1 39 (2 issues need help) 0 Updated Nov 7, 2024
  • bagel-cli Public

    Command line tool for Neurobagel data parsing and annotation

    neurobagel/bagel-cli’s past year of commit activity
    Python 2 MIT 5 23 (3 issues need help) 2 Updated Nov 7, 2024
  • neurobagel_examples Public

    Example files using the neurobagel schema

    neurobagel/neurobagel_examples’s past year of commit activity
    Shell 0 MIT 0 0 0 Updated Nov 7, 2024
  • api Public
    neurobagel/api’s past year of commit activity
    Python 4 MIT 3 18 0 Updated Nov 7, 2024
  • planning Public
    neurobagel/planning’s past year of commit activity
    0 MIT 0 52 0 Updated Nov 7, 2024
  • dev-docs Public

    Documentation for people developing neurobagel

    neurobagel/dev-docs’s past year of commit activity
    0 0 2 0 Updated Nov 7, 2024
  • ui Public
    neurobagel/ui’s past year of commit activity
    TypeScript 0 MIT 0 5 0 Updated Nov 5, 2024

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