Add container with MEME suite installation to Windows, MacOS runners #31
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| name: rworkflows | |
| 'on': | |
| push: | |
| branches: | |
| - master | |
| - main | |
| - devel | |
| - RELEASE_** | |
| pull_request: | |
| branches: | |
| - master | |
| - main | |
| - devel | |
| - RELEASE_** | |
| jobs: | |
| rworkflows: | |
| permissions: write-all | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| container: ${{ matrix.config.cont }} | |
| strategy: | |
| fail-fast: ${{ false }} | |
| matrix: | |
| config: | |
| - os: ubuntu-latest | |
| bioc: devel | |
| r: auto | |
| cont: docker.io/tomrrr1/bioconductor_meme:latest # Custom image | |
| rspm: https://packagemanager.rstudio.com/cran/__linux__/focal/release | |
| - os: macOS-latest | |
| bioc: release | |
| r: auto | |
| cont: docker.io/tomrrr1/bioconductor_meme:latest # Custom image | |
| rspm: https://packagemanager.rstudio.com/cran/__linux__/focal/release | |
| - os: windows-latest | |
| r: latest | |
| bioc: release | |
| cont: docker.io/tomrrr1/bioconductor_meme:latest # Custom image | |
| rspm: https://packagemanager.rstudio.com/cran/__linux__/focal/release | |
| steps: | |
| - name: Set MEME_BIN environment variable | |
| run: echo "MEME_BIN=/meme/bin" >> $GITHUB_ENV | |
| - name: Check MEME_BIN | |
| run: echo $MEME_BIN | |
| - uses: HDash/rworkflows@master | |
| with: | |
| run_bioccheck: ${{ true }} | |
| run_rcmdcheck: ${{ true }} | |
| as_cran: ${{ true }} | |
| run_vignettes: ${{ true }} | |
| has_testthat: ${{ true }} | |
| run_covr: ${{ true }} | |
| run_pkgdown: ${{ true }} | |
| has_runit: ${{ false }} | |
| has_latex: ${{ false }} | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| DOCKER_TOKEN: ${{ secrets.DOCKER_TOKEN }} | |
| docker_user: hdasht | |
| docker_org: neurogenomicslab | |
| run_docker: ${{ true }} |