New JSON fields rordenlab/dcm2niix#127

neurolabusc · Oct 17, 2017 · c7bab67 · c7bab67
1 parent 911b5c4
commit c7bab67
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Showing 51 changed files with 1,344 additions and 49 deletions.
diff --git a/Ref/58PF_noPAT_noPOS_PEres100_ES0p59_BW2222_AP_16.json b/Ref/58PF_noPAT_noPOS_PEres100_ES0p59_BW2222_AP_16.json
@@ -4,26 +4,43 @@
 	"Manufacturer": "Siemens",
 	"ManufacturersModelName": "Prisma",
 	"InstitutionName": "Washington_University",
+	"InstitutionalDepartmentName": "Department",
 	"InstitutionAddress": "Scott_Avenue_4525_Saint_Louis_St._Louis_US_63110",
 	"DeviceSerialNumber": "166038",
 	"StationName": "AWP166038",
 	"BodyPartExamined": "BRAIN",
+	"PatientPosition": "HFS",
 	"ProcedureStepDescription": "HEAD_Harms",
 	"SoftwareVersions": "syngo_MR_E11",
+	"MRAcquisitionType": "2D",
 	"SeriesDescription": "58PF_noPAT_noPOS_PEres100_ES0p59_BW2222_AP",
 	"ProtocolName": "58PF_noPAT_noPOS_PEres100_ES0p59_BW2222_AP",
 	"ScanningSequence": "EP",
 	"SequenceVariant": "SK",
 	"ScanOptions": "PFP_FS",
 	"SequenceName": "epse2d1_90",
 	"ImageType": ["ORIGINAL", "PRIMARY", "M", "ND", "MOSAIC"],
+	"SeriesNumber": 16,
 	"AcquisitionTime": "15:35:9.335000",
 	"AcquisitionNumber": 1,
+	"SliceThickness": 2.4,
+	"SpacingBetweenSlices": 2.4,
+	"SAR": 0.153873,
 	"EchoTime": 0.06,
 	"RepetitionTime": 6.1,
 	"FlipAngle": 90,
 	"PartialFourier": 0.625,
 	"BaseResolution": 90,
+	"ShimSetting": [
+		-2173,
+		-2599,
+		7633,
+		33,
+		30,
+		-81,
+		130,
+		22	],
+	"TxRefAmp": 245.022,
 	"PhaseResolution": 1,
 	"VendorReportedEchoSpacing": 0.00059,
 	"ReceiveCoilName": "Head_32",
@@ -39,6 +56,7 @@
 	"EffectiveEchoSpacing": 0.000590012,
 	"DerivedVendorReportedEchoSpacing": 0.000590012,
 	"TotalReadoutTime": 0.0525111,
+	"PixelBandwidth": 2220,
 	"DwellTime": 2.5e-06,
 	"PhaseEncodingDirection": "j-",
 	"SliceTiming": [
@@ -102,6 +120,14 @@
 		2.8375,
 		5.9775,
 		2.9375	],
+	"ImageOrientationPatientDICOM": [
+		1,
+		0,
+		0,
+		0,
+		1,
+		0	],
+	"InPlanePhaseEncodingDirectionDICOM": "COL",
 	"ConversionSoftware": "dcm2niix",
-	"ConversionSoftwareVersion": "v1.0.20170821 (OpenJPEG build) Clang7.3.0"
+	"ConversionSoftwareVersion": "v1.0.20171017 (OpenJPEG build) Clang7.3.0"
 }
diff --git a/Ref/58PF_noPAT_noPOS_PEres100_ES0p59_BW2222_PA_17.json b/Ref/58PF_noPAT_noPOS_PEres100_ES0p59_BW2222_PA_17.json
@@ -4,26 +4,43 @@
 	"Manufacturer": "Siemens",
 	"ManufacturersModelName": "Prisma",
 	"InstitutionName": "Washington_University",
+	"InstitutionalDepartmentName": "Department",
 	"InstitutionAddress": "Scott_Avenue_4525_Saint_Louis_St._Louis_US_63110",
 	"DeviceSerialNumber": "166038",
 	"StationName": "AWP166038",
 	"BodyPartExamined": "BRAIN",
+	"PatientPosition": "HFS",
 	"ProcedureStepDescription": "HEAD_Harms",
 	"SoftwareVersions": "syngo_MR_E11",
+	"MRAcquisitionType": "2D",
 	"SeriesDescription": "58PF_noPAT_noPOS_PEres100_ES0p59_BW2222_PA",
 	"ProtocolName": "58PF_noPAT_noPOS_PEres100_ES0p59_BW2222_PA",
 	"ScanningSequence": "EP",
 	"SequenceVariant": "SK",
 	"ScanOptions": "PFP_FS",
 	"SequenceName": "epse2d1_90",
 	"ImageType": ["ORIGINAL", "PRIMARY", "M", "ND", "MOSAIC"],
+	"SeriesNumber": 17,
 	"AcquisitionTime": "15:36:12.390000",
 	"AcquisitionNumber": 1,
+	"SliceThickness": 2.4,
+	"SpacingBetweenSlices": 2.4,
+	"SAR": 0.153873,
 	"EchoTime": 0.06,
 	"RepetitionTime": 6.1,
 	"FlipAngle": 90,
 	"PartialFourier": 0.625,
 	"BaseResolution": 90,
+	"ShimSetting": [
+		-2173,
+		-2599,
+		7633,
+		33,
+		30,
+		-81,
+		130,
+		22	],
+	"TxRefAmp": 245.022,
 	"PhaseResolution": 1,
 	"VendorReportedEchoSpacing": 0.00059,
 	"ReceiveCoilName": "Head_32",
@@ -39,6 +56,7 @@
 	"EffectiveEchoSpacing": 0.000590012,
 	"DerivedVendorReportedEchoSpacing": 0.000590012,
 	"TotalReadoutTime": 0.0525111,
+	"PixelBandwidth": 2220,
 	"DwellTime": 2.5e-06,
 	"PhaseEncodingDirection": "j",
 	"SliceTiming": [
@@ -102,6 +120,14 @@
 		2.8375,
 		5.9775,
 		2.9375	],
+	"ImageOrientationPatientDICOM": [
+		1,
+		0,
+		0,
+		0,
+		1,
+		0	],
+	"InPlanePhaseEncodingDirectionDICOM": "COL",
 	"ConversionSoftware": "dcm2niix",
-	"ConversionSoftwareVersion": "v1.0.20170821 (OpenJPEG build) Clang7.3.0"
+	"ConversionSoftwareVersion": "v1.0.20171017 (OpenJPEG build) Clang7.3.0"
 }
diff --git a/Ref/78PF_noPAT_noPOS_PEres100_ES0p59_BW2222_AP_18.json b/Ref/78PF_noPAT_noPOS_PEres100_ES0p59_BW2222_AP_18.json
@@ -4,26 +4,43 @@
 	"Manufacturer": "Siemens",
 	"ManufacturersModelName": "Prisma",
 	"InstitutionName": "Washington_University",
+	"InstitutionalDepartmentName": "Department",
 	"InstitutionAddress": "Scott_Avenue_4525_Saint_Louis_St._Louis_US_63110",
 	"DeviceSerialNumber": "166038",
 	"StationName": "AWP166038",
 	"BodyPartExamined": "BRAIN",
+	"PatientPosition": "HFS",
 	"ProcedureStepDescription": "HEAD_Harms",
 	"SoftwareVersions": "syngo_MR_E11",
+	"MRAcquisitionType": "2D",
 	"SeriesDescription": "78PF_noPAT_noPOS_PEres100_ES0p59_BW2222_AP",
 	"ProtocolName": "78PF_noPAT_noPOS_PEres100_ES0p59_BW2222_AP",
 	"ScanningSequence": "EP",
 	"SequenceVariant": "SK",
 	"ScanOptions": "PFP_FS",
 	"SequenceName": "epse2d1_90",
 	"ImageType": ["ORIGINAL", "PRIMARY", "M", "ND", "MOSAIC"],
+	"SeriesNumber": 18,
 	"AcquisitionTime": "15:37:2.160000",
 	"AcquisitionNumber": 1,
+	"SliceThickness": 2.4,
+	"SpacingBetweenSlices": 2.4,
+	"SAR": 0.153873,
 	"EchoTime": 0.06,
 	"RepetitionTime": 6.1,
 	"FlipAngle": 90,
 	"PartialFourier": 0.875,
 	"BaseResolution": 90,
+	"ShimSetting": [
+		-2173,
+		-2599,
+		7633,
+		33,
+		30,
+		-81,
+		130,
+		22	],
+	"TxRefAmp": 245.022,
 	"PhaseResolution": 1,
 	"VendorReportedEchoSpacing": 0.00059,
 	"ReceiveCoilName": "Head_32",
@@ -39,6 +56,7 @@
 	"EffectiveEchoSpacing": 0.000590012,
 	"DerivedVendorReportedEchoSpacing": 0.000590012,
 	"TotalReadoutTime": 0.0525111,
+	"PixelBandwidth": 2220,
 	"DwellTime": 2.5e-06,
 	"PhaseEncodingDirection": "j-",
 	"SliceTiming": [
@@ -102,6 +120,14 @@
 		2.8375,
 		5.98,
 		2.94	],
+	"ImageOrientationPatientDICOM": [
+		1,
+		0,
+		0,
+		0,
+		1,
+		0	],
+	"InPlanePhaseEncodingDirectionDICOM": "COL",
 	"ConversionSoftware": "dcm2niix",
-	"ConversionSoftwareVersion": "v1.0.20170821 (OpenJPEG build) Clang7.3.0"
+	"ConversionSoftwareVersion": "v1.0.20171017 (OpenJPEG build) Clang7.3.0"
 }
diff --git a/Ref/78PF_noPAT_noPOS_PEres100_ES0p59_BW2222_PA_19.json b/Ref/78PF_noPAT_noPOS_PEres100_ES0p59_BW2222_PA_19.json
@@ -4,26 +4,43 @@
 	"Manufacturer": "Siemens",
 	"ManufacturersModelName": "Prisma",
 	"InstitutionName": "Washington_University",
+	"InstitutionalDepartmentName": "Department",
 	"InstitutionAddress": "Scott_Avenue_4525_Saint_Louis_St._Louis_US_63110",
 	"DeviceSerialNumber": "166038",
 	"StationName": "AWP166038",
 	"BodyPartExamined": "BRAIN",
+	"PatientPosition": "HFS",
 	"ProcedureStepDescription": "HEAD_Harms",
 	"SoftwareVersions": "syngo_MR_E11",
+	"MRAcquisitionType": "2D",
 	"SeriesDescription": "78PF_noPAT_noPOS_PEres100_ES0p59_BW2222_PA",
 	"ProtocolName": "78PF_noPAT_noPOS_PEres100_ES0p59_BW2222_PA",
 	"ScanningSequence": "EP",
 	"SequenceVariant": "SK",
 	"ScanOptions": "PFP_FS",
 	"SequenceName": "epse2d1_90",
 	"ImageType": ["ORIGINAL", "PRIMARY", "M", "ND", "MOSAIC"],
+	"SeriesNumber": 19,
 	"AcquisitionTime": "15:37:38.497500",
 	"AcquisitionNumber": 1,
+	"SliceThickness": 2.4,
+	"SpacingBetweenSlices": 2.4,
+	"SAR": 0.153873,
 	"EchoTime": 0.06,
 	"RepetitionTime": 6.1,
 	"FlipAngle": 90,
 	"PartialFourier": 0.875,
 	"BaseResolution": 90,
+	"ShimSetting": [
+		-2173,
+		-2599,
+		7633,
+		33,
+		30,
+		-81,
+		130,
+		22	],
+	"TxRefAmp": 245.022,
 	"PhaseResolution": 1,
 	"VendorReportedEchoSpacing": 0.00059,
 	"ReceiveCoilName": "Head_32",
@@ -39,6 +56,7 @@
 	"EffectiveEchoSpacing": 0.000590012,
 	"DerivedVendorReportedEchoSpacing": 0.000590012,
 	"TotalReadoutTime": 0.0525111,
+	"PixelBandwidth": 2220,
 	"DwellTime": 2.5e-06,
 	"PhaseEncodingDirection": "j",
 	"SliceTiming": [
@@ -102,6 +120,14 @@
 		2.835,
 		5.9775,
 		2.9375	],
+	"ImageOrientationPatientDICOM": [
+		1,
+		0,
+		0,
+		0,
+		1,
+		0	],
+	"InPlanePhaseEncodingDirectionDICOM": "COL",
 	"ConversionSoftware": "dcm2niix",
-	"ConversionSoftwareVersion": "v1.0.20170821 (OpenJPEG build) Clang7.3.0"
+	"ConversionSoftwareVersion": "v1.0.20171017 (OpenJPEG build) Clang7.3.0"
 }
diff --git a/Ref/ax_asc_35sl_6.json b/Ref/ax_asc_35sl_6.json
@@ -4,25 +4,43 @@
 	"Manufacturer": "Siemens",
 	"ManufacturersModelName": "TrioTim",
 	"InstitutionName": "USC",
+	"InstitutionalDepartmentName": "Radiology",
 	"InstitutionAddress": "Medical_Center_Dr_5_Columbia_SC_US_29203",
 	"DeviceSerialNumber": "35131",
 	"StationName": "MRC35131",
+	"PatientPosition": "HFS",
 	"ProcedureStepDescription": "Research_MCBI_TESTING",
 	"SoftwareVersions": "syngo_MR_B17",
+	"MRAcquisitionType": "2D",
 	"SeriesDescription": "ax_asc_35sl",
 	"ProtocolName": "ax_asc_35sl",
 	"ScanningSequence": "EP",
 	"SequenceVariant": "SK",
 	"ScanOptions": "FS",
 	"SequenceName": "_epfid2d1_64",
 	"ImageType": ["ORIGINAL", "PRIMARY", "M", "ND", "MOSAIC"],
+	"SeriesNumber": 6,
 	"AcquisitionTime": "13:49:35.305000",
 	"AcquisitionNumber": 1,
+	"SliceThickness": 3,
+	"SpacingBetweenSlices": 3.6,
+	"SAR": 0.0954132,
 	"EchoTime": 0.03,
 	"RepetitionTime": 3,
 	"FlipAngle": 76,
 	"PartialFourier": 1,
 	"BaseResolution": 64,
+	"ShimSetting": [
+		10737,
+		-10591,
+		3103,
+		485,
+		9,
+		-267,
+		-184,
+		73	],
+	"DelayTime": 0.5,
+	"TxRefAmp": 399.953,
 	"PhaseResolution": 1,
 	"ReceiveCoilName": "HeadMatrix",
 	"PulseSequenceDetails": "%SiemensSeq%_ep2d_bold",
@@ -35,6 +53,7 @@
 	"EffectiveEchoSpacing": 0.000279998,
 	"DerivedVendorReportedEchoSpacing": 0.000559996,
 	"TotalReadoutTime": 0.0176399,
+	"PixelBandwidth": 2111,
 	"DwellTime": 3.7e-06,
 	"PhaseEncodingDirection": "j-",
 	"SliceTiming": [
@@ -73,6 +92,14 @@
 		2.295,
 		2.365,
 		2.4375	],
+	"ImageOrientationPatientDICOM": [
+		1,
+		-1e-16,
+		0,
+		1e-16,
+		0.994151,
+		-0.107999	],
+	"InPlanePhaseEncodingDirectionDICOM": "COL",
 	"ConversionSoftware": "dcm2niix",
-	"ConversionSoftwareVersion": "v1.0.20170821 (OpenJPEG build) Clang7.3.0"
+	"ConversionSoftwareVersion": "v1.0.20171017 (OpenJPEG build) Clang7.3.0"
 }