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update documentation
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Signed-off-by: Bastian Eisenmann <bastian.eisenmann@uni-tuebingen.de>
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Bastian-Eisenmann committed Dec 19, 2024
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2 changes: 1 addition & 1 deletion docs/usage/configuration.md
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Expand Up @@ -8,7 +8,7 @@ description: Configuration of the nf-co2footprint plugin
## General usage
To test if the plugin works on your system please follow the quick start guide ([Quick Start](https://nextflow-io.github.io/nf-co2footprint/#quick-start)) on a small pipeline like [nextflow-io/hello](https://github.com/nextflow-io/hello).

If the plugin works and a html report is being produced you can start making the output meaningful for your specific run, by using a customized configuration file. The configuration file could look something like this:
You can adjust the nf-co2footprint plugin parameters in your config file as follows:

```groovy title="nextflow.config"
plugins {
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4 changes: 2 additions & 2 deletions docs/usage/output.md
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Expand Up @@ -7,9 +7,9 @@ description: Output of the nf-co2footprint plugin.

The nf-co2footprint plugin creates three output files:

- `traceFile`: The trace file includes calculations for each task. Similar to the nextflow trace file. Within this file you can find resource usage details of specific tasks and also the hardware information of your CPU.
- `traceFile`: The trace file includes calculations for each task, similar to the Nextflow trace file. Within this file you can find resource usage details of specific tasks and also the hardware information of your CPU.
- `summaryFile`: The summary file includes the total CO<sub>2</sub> footprint of the workflow run and the configuration used for the plugin.
- `reportFile`: The html report file includes data from trace and summary file and also summary figures of the executed tasks.
- `reportFile`: The HTML report contains information about the carbon footprint of the whole pipeline run as well as plots showing the distributions of the CO<sub>2</sub> emissions for the different processes. Additionally, it contains a table with the metrics for all individual tasks.



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