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remove redundant information from output report #40

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Oct 6, 2023
Merged

remove redundant information from output report #40

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52 changes: 2 additions & 50 deletions plugins/nf-co2footprint/src/resources/CO2FootprintReportTemplate.html
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Original file line number Diff line number Diff line change
Expand Up @@ -142,61 +142,11 @@ <h4>Workflow execution completed unsuccessfully!</h4>
(<span id="completed_fromnow"></span>duration: <strong>${workflow.duration}</strong>)
</dd>

<dl>
<div class="progress" style="height: 1.6rem; margin: 1.2rem auto; border-radius: 0.20rem;">
<div style="width: ${workflow.stats.succeedPct}%" class="progress-bar bg-success" data-toggle="tooltip" data-placement="top" title="$workflow.stats.succeedCount tasks succeeded"><span class="text-truncate">&nbsp; $workflow.stats.succeedCount succeeded &nbsp;</span></div>
<div style="width: ${workflow.stats.cachedPct}%" class="progress-bar bg-secondary" data-toggle="tooltip" data-placement="top" title="$workflow.stats.cachedCount tasks were cached"><span class="text-truncate">&nbsp; $workflow.stats.cachedCount cached &nbsp;</span></div>
<div style="width: ${workflow.stats.ignoredPct}%" class="progress-bar bg-warning" data-toggle="tooltip" data-placement="top" title="$workflow.stats.ignoredCount tasks reported and error and were ignored"><span class="text-truncate">&nbsp; $workflow.stats.ignoredCount ignored &nbsp;</span></div>
<div style="width: ${workflow.stats.failedPct}%" class="progress-bar bg-danger" data-toggle="tooltip" data-placement="top" title="$workflow.stats.failedCount tasks failed"><span class="text-truncate">&nbsp; $workflow.stats.failedCount failed &nbsp;</span></div>
</div>
</dl>

<dt>Nextflow command</dt>
<dd><pre class="nfcommand"><code>${workflow.commandLine}</code></pre></dd>
</dl>

<dl class="row small">
<dt class="col-sm-3">CPU-Hours</dt>
<dd class="col-sm-9"><samp>${workflow.stats.computeTimeFmt}</samp></dd>

<dt class="col-sm-3">Launch directory</dt>
<dd class="col-sm-9"><samp>${workflow.launchDir}</samp></dd>

<dt class="col-sm-3">Work directory</dt>
<dd class="col-sm-9"><samp>${workflow.workDir.toUriString()}</samp></dd>

<dt class="col-sm-3">Project directory</dt>
<dd class="col-sm-9"><samp>${workflow.projectDir}</samp></dd>

<% if (workflow.scriptName) { %>
<dt class="col-sm-3">Script name</dt>
<dd class="col-sm-9"><samp>${workflow.scriptName}</samp></dd>
<% } %>

<% if (workflow.scriptId) { %>
<dt class="col-sm-3">Script ID</dt>
<dd class="col-sm-9"><code>${workflow.scriptId}</code></dd>
<% } %>

<dt class="col-sm-3">Workflow session</dt>
<dd class="col-sm-9"><code>${workflow.sessionId}</code></dd>

<% if (workflow.repository) { %>
<dt class="col-sm-3">Workflow repository</dt>
<dd class="col-sm-9"><code>${workflow.repository}</code>, revision <code>${workflow.revision}</code> (commit hash <code>${workflow.commitId}</code>)</dd>
<% } %>

<dt class="col-sm-3">Workflow profile</dt>
<dd class="col-sm-9">${workflow.profile}</dd>

<% if (workflow.container) { %>
<dt class="col-sm-3">Workflow container</dt>
<dd class="col-sm-9"><samp>${workflow.container}</samp></dd>

<dt class="col-sm-3">Container engine</dt>
<dd class="col-sm-9"><samp>${workflow.containerEngine?:'-'}</samp></dd>
<% } %>

<dt class="col-sm-3">Nextflow version</dt>
<dd class="col-sm-9">version ${workflow.nextflow.version}, build ${workflow.nextflow.build} (${workflow.nextflow.timestamp})</dd>
</dl>
Expand Down Expand Up @@ -230,11 +180,13 @@ <h4>Workflow execution completed unsuccessfully!</h4>
<% } %>
</dl>

<dl class="row small">
<p>The calculation of these values is based on the carbon footprint computation method
developed in the Green Algorithms project: www.green-algorithms.org</p>
<p>Lannelongue, L., Grealey, J., Inouye, M.,
Green Algorithms: Quantifying the Carbon Footprint of Computation.
Adv. Sci. 2021, 2100707. https://doi.org/10.1002/advs.202100707</p>
</dl>
</div>
</div>

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