Skip to content

Navigation Menu

Appearance settings

nextstrain

Explore
By company size
By use case
By industry
View all solutions
Topics
- AI
- DevOps
- Security
- Software Development
- View all
Explore
- GitHub Sponsors
  Fund open source developers
- The ReadME Project
  GitHub community articles
Repositories
- Enterprise platform
  AI-powered developer platform
Available add-ons
Pricing

Search code, repositories, users, issues, pull requests...

Search

Clear

Search syntax tips

Provide feedback

We read every piece of feedback, and take your input very seriously.

Include my email address so I can be contacted

Saved searches

Use saved searches to filter your results more quickly

Name

Query

To see all available qualifiers, see our documentation.

Appearance settings

You signed in with another tab or window. Reload to refresh your session. You signed out in another tab or window. Reload to refresh your session. You switched accounts on another tab or window. Reload to refresh your session.

Dismiss alert

Nextstrain

Real-time tracking of pathogen evolution

187 followers
https://nextstrain.org
@nextstrain
@nextstrain@mstdn.science

Overview
Repositories
Projects
Packages
People

More

Overview
Repositories
Projects
Packages
People

Pinned Loading

ncov ncov Public

Nextstrain build for SARS-CoV-2

Python 1.4k 405
augur augur Public

Pipeline components for real-time phylodynamic analysis

Python 270 132
auspice auspice Public

Web app for visualizing pathogen evolution

JavaScript 300 168

Repositories

Loading

Type

Select type

All Public Sources Forks Archived Mirrors Templates

Language

Select language

All C Go HTML JavaScript Jupyter Notebook Makefile Nextflow Perl Python R Rust Shell TeX TypeScript WDL

Sort

Select order

Last updated Name Stars

Showing 10 of 95 repositories

augur Public
Pipeline components for real-time phylodynamic analysis

nextstrain/augur’s past year of commit activity

Python 270 AGPL-3.0 132 218 (1 issue needs help) 34 Updated Jun 3, 2025
.github Public

nextstrain/.github’s past year of commit activity

Shell 8 11 8 2 Updated Jun 3, 2025
nextclade_data Public
Datasets for https://github.com/nextstrain/nextclade

nextstrain/nextclade_data’s past year of commit activity

Python 35 29 9 16 Updated Jun 3, 2025
auspice.us Public

nextstrain/auspice.us’s past year of commit activity

JavaScript 13 8 4 1 Updated Jun 3, 2025
auspice Public
Web app for visualizing pathogen evolution

nextstrain/auspice’s past year of commit activity

JavaScript 300 AGPL-3.0 168 244 (4 issues need help) 34 Updated Jun 3, 2025
nextclade Public
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

nextstrain/nextclade’s past year of commit activity

Rust 233 MIT 62 113 (35 issues need help) 22 Updated Jun 3, 2025
zika Public
Nextstrain build for Zika virus

nextstrain/zika’s past year of commit activity

Python 9 11 4 2 Updated Jun 3, 2025
lassa Public
Nextstrain build for Lassa virus

nextstrain/lassa’s past year of commit activity

Python 0 5 7 2 Updated Jun 3, 2025
rubella Public
Nextstrain build for rubella virus

nextstrain/rubella’s past year of commit activity

Python 2 1 9 7 Updated Jun 3, 2025
mumps Public
Nextstrain build for mumps virus

nextstrain/mumps’s past year of commit activity

Python 2 5 3 3 Updated Jun 3, 2025

View all repositories

People

Top languages

Loading…

Uh oh!

There was an error while loading. Please reload this page.

Most used topics

Loading…

Uh oh!

There was an error while loading. Please reload this page.

Footer

© 2025 GitHub, Inc.

Footer navigation

Terms
Privacy
Security
Status
Docs
Contact

You can’t perform that action at this time.