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@nextstrain

Nextstrain

Real-time tracking of pathogen evolution

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  1. ncov ncov Public

    Nextstrain build for novel coronavirus SARS-CoV-2

    Python 1.4k 403

  2. augur augur Public

    Pipeline components for real-time phylodynamic analysis

    Python 269 128

  3. auspice auspice Public

    Web app for visualizing pathogen evolution

    JavaScript 296 163

Repositories

Showing 10 of 94 repositories
  • lassa Public

    Nextstrain build for Lassa virus

    nextstrain/lassa’s past year of commit activity
    Python 0 5 10 1 Updated Jan 22, 2025
  • nextclade_data Public

    Datasets for https://github.com/nextstrain/nextclade

    nextstrain/nextclade_data’s past year of commit activity
    Python 32 27 8 12 Updated Jan 22, 2025
  • augur Public

    Pipeline components for real-time phylodynamic analysis

    nextstrain/augur’s past year of commit activity
    Python 269 AGPL-3.0 128 223 (1 issue needs help) 37 Updated Jan 22, 2025
  • auspice.us Public
    nextstrain/auspice.us’s past year of commit activity
    JavaScript 13 8 6 1 Updated Jan 22, 2025
  • nextstrain.org Public

    The Nextstrain website

    nextstrain/nextstrain.org’s past year of commit activity
    JavaScript 93 AGPL-3.0 49 68 11 Updated Jan 22, 2025
  • auspice Public

    Web app for visualizing pathogen evolution

    nextstrain/auspice’s past year of commit activity
    JavaScript 296 AGPL-3.0 163 231 (4 issues need help) 29 Updated Jan 22, 2025
  • avian-flu Public

    Nextstrain build for avian influenza viruses

    nextstrain/avian-flu’s past year of commit activity
    Python 22 9 11 8 Updated Jan 22, 2025
  • WNV Public

    the repository used to build West Nile Virus for nextstrain

    nextstrain/WNV’s past year of commit activity
    Python 3 0 6 1 Updated Jan 21, 2025
  • nextclade Public

    Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

    nextstrain/nextclade’s past year of commit activity
    Rust 223 MIT 61 111 (32 issues need help) 19 Updated Jan 21, 2025
  • mpox Public

    Nextstrain build for mpox virus

    nextstrain/mpox’s past year of commit activity
    Python 45 MIT 19 26 4 Updated Jan 21, 2025
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