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@nextstrain

Nextstrain

Real-time tracking of pathogen evolution

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  1. ncov ncov Public

    Nextstrain build for novel coronavirus SARS-CoV-2

    Python 1.4k 403

  2. augur augur Public

    Pipeline components for real-time phylodynamic analysis

    Python 270 128

  3. auspice auspice Public

    Web app for visualizing pathogen evolution

    JavaScript 295 162

Repositories

Showing 10 of 94 repositories
  • auspice Public

    Web app for visualizing pathogen evolution

    nextstrain/auspice’s past year of commit activity
    JavaScript 295 AGPL-3.0 162 238 (4 issues need help) 33 Updated Dec 21, 2024
  • augur Public

    Pipeline components for real-time phylodynamic analysis

    nextstrain/augur’s past year of commit activity
    Python 270 AGPL-3.0 128 240 (1 issue needs help) 55 Updated Dec 21, 2024
  • WNV Public

    the repository used to build West Nile Virus for nextstrain

    nextstrain/WNV’s past year of commit activity
    Python 2 0 7 1 Updated Dec 20, 2024
  • dengue Public

    Nextstrain build for dengue virus

    nextstrain/dengue’s past year of commit activity
    Python 8 11 13 (1 issue needs help) 1 Updated Dec 20, 2024
  • yellow-fever Public
    nextstrain/yellow-fever’s past year of commit activity
    Python 0 4 2 2 Updated Dec 20, 2024
  • hmpv Public

    Human metapneumovirus pathogen build

    nextstrain/hmpv’s past year of commit activity
    Python 0 0 1 1 Updated Dec 20, 2024
  • oropouche Public

    Oropouche Nextstrain build

    nextstrain/oropouche’s past year of commit activity
    Python 1 0 0 0 Updated Dec 20, 2024
  • mpox Public

    Nextstrain build for mpox virus

    nextstrain/mpox’s past year of commit activity
    Python 45 MIT 19 27 7 Updated Dec 20, 2024
  • ncov-ingest Public

    A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV rebuilds.

    nextstrain/ncov-ingest’s past year of commit activity
    Python 36 MIT 20 31 8 Updated Dec 20, 2024
  • fauna Public

    RethinkDB database to support real-time virus analysis

    nextstrain/fauna’s past year of commit activity
    Python 33 AGPL-3.0 13 20 12 Updated Dec 20, 2024
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