Auspice 2.35.0

Upgrade how we render dropdown menus, which greatly improves the display of long options (e.g. submitting labs).
See PR 1482 for more.

Auspice 2.34.1

• (Minor change) expose functions for use in auspice.us. See PR 1478 for more.

Auspice 2.34.0

Major changes

• Measurements panel intended for displaying titer or DMS data where a tip in the tree has multiple values associated with it.
  This function requires a dataset with a _measurements.json sidecar file
  See PR 1452 for more.

Minor changes

• Improved YAML parsing for narratives
  See PR 1472 for more.
• Remove unused properties from tip-frequencies panel.
  See PR 1471 for more.
• Fixed a bug where shift+clicking on branches for trees without mutations defined caused a crash.
  See PR 1475 for more.

Auspice 2.33.0

• (Experimental) Explode phylogeny into subtrees and allow multiple trees to be provided in the dataset.
  See PR 1442 for more.
• Categorise mutations to better understand sequence changes on branches and tips.
  See PR 1449 for more.
• Add a datepicker to allow precise changes to the selected date range.
  See PR 1412 for more.
• Allow build-time customizable fine print.
  See PR 1448 for more.
• Remove scrollbar in panels when no scrolling is possible
  See PR 1439 for more.
• Allow searching in the color-by dropdown.
  See PR 1456 for more.

Auspice 2.32.1

Small bugfix to fix URL parsing to allow the string "narratives" to be in a dataset without it being interpreted as a narrative itself.
See PR 1428 for more.

Auspice 2.32.0

• Tree info boxes are now improved, and you can shift+click on a branch to see more information about that branch.
  See PR 1420 for more.
• Filters in footer are now expandable to improve usability and discoverability of the true footer.
  See PR 1414 for more.
• Fixed a bug with CSV (drag & drop) parsing. See PR 1401 for more.
• Removed unnecessary postinstall step. See PR 1419 for more.
• Improved image sizing in narratives. See PR 1408 for more.
• Improved documentation around how to build auspice documentation!

Full Changelog

Installation docs

Note: GitHub releases have not been actively maintained since 2.0.0 - we will endeavour to create releases for each published auspice version starting from now. Auspice is published using npm and so assets will not be provided with each (GitHub) release.

version 2 release

Please see https://nextstrain.github.io/auspice/releases/v2 for the auspice v2 release notes

v1.30.0

• Auspice is now globally installable and published as a npm package npmjs.com/package/auspice
• AA entropy calculation bug fixed - PR 657
• Narrative scroll bars are fixed for Linux & Windows browsers - PR 653
• Tree legend placement improved - PR 650
• npm run start is no longer deprecated

v1.29.0

• The visibility of nodes on the tree now more accurately reflects the selected date range - PR 644
• Info text is easier to read & the date range reflects the genomes in view - PR 639

Narrative improvements

• Toggle between narrative & interactive mode is much clearer - PR 648
• URL queries with no clade set zoom to the entire tree - PR 644

v1.28.0

• Narratives -- see nextstrain.org/docs/visualisation/narratives for documentation.
• Time slicing & non-highlighted branches are now displayed in a cleaner fashion - PR 638
• Selected clades (i.e. the tree has been zoomed) are now part of URL state - PR 633