Merge pull request #225 from nf-cmgg/fix/gatk4-resources

lower all gatk4 resources
nf-cmgg · Nov 19, 2024 · ffcc9ca · ffcc9ca
2 parents b3a28df + 03d7c4a
commit ffcc9ca
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Showing 7 changed files with 66 additions and 6 deletions.
diff --git a/modules.json b/modules.json
@@ -102,17 +102,20 @@
                     "gatk4/createsequencedictionary": {
                         "branch": "master",
                         "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
-                        "installed_by": ["modules"]
+                        "installed_by": ["modules"],
+                        "patch": "modules/nf-core/gatk4/createsequencedictionary/gatk4-createsequencedictionary.diff"
                     },
                     "gatk4/genomicsdbimport": {
                         "branch": "master",
                         "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
-                        "installed_by": ["modules"]
+                        "installed_by": ["modules"],
+                        "patch": "modules/nf-core/gatk4/genomicsdbimport/gatk4-genomicsdbimport.diff"
                     },
                     "gatk4/genotypegvcfs": {
                         "branch": "master",
                         "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
-                        "installed_by": ["modules"]
+                        "installed_by": ["modules"],
+                        "patch": "modules/nf-core/gatk4/genotypegvcfs/gatk4-genotypegvcfs.diff"
                     },
                     "gatk4/haplotypecaller": {
                         "branch": "master",

diff --git a/modules/nf-core/gatk4/createsequencedictionary/gatk4-createsequencedictionary.diff b/modules/nf-core/gatk4/createsequencedictionary/gatk4-createsequencedictionary.diff
diff --git a/modules/nf-core/gatk4/createsequencedictionary/main.nf b/modules/nf-core/gatk4/createsequencedictionary/main.nf
diff --git a/modules/nf-core/gatk4/genomicsdbimport/gatk4-genomicsdbimport.diff b/modules/nf-core/gatk4/genomicsdbimport/gatk4-genomicsdbimport.diff
diff --git a/modules/nf-core/gatk4/genomicsdbimport/main.nf b/modules/nf-core/gatk4/genomicsdbimport/main.nf
diff --git a/modules/nf-core/gatk4/genotypegvcfs/gatk4-genotypegvcfs.diff b/modules/nf-core/gatk4/genotypegvcfs/gatk4-genotypegvcfs.diff
diff --git a/modules/nf-core/gatk4/genotypegvcfs/main.nf b/modules/nf-core/gatk4/genotypegvcfs/main.nf